AGT23557 (N559_1823)

Aliases : N559_1823

Description : HTH-type transcriptional regulator cbl [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT23557
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAC75049	cbl, b1987	ssuEADCB/tauABCD operon transcriptional activator...	0.1	OrthoFinder
AAC75050	nac, b1988	nitrogen assimilation regulon transcriptional regulator;...	0.07	OrthoFinder
AAC75590	hcaR, b2537	hca operon transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AAL20406	STM1487, ynfL	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AAL20631	STM1713, cysB	transcriptional regulator for cysteine regulon...	0.03	OrthoFinder
AEA94055	OG1RF_11368	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AKI50286	L2625_02454	transcriptional regulator, LysR family [Ensembl]. LysR,...	0.08	OrthoFinder
CPC44234	lysR, ERS093114_00453	LysR family regulatory protein [Ensembl]. LysR substrate...	0.03	OrthoFinder
CPD33378	gltC, ERS093114_02589	Transcription activator of glutamate synthase operon...	0.04	OrthoFinder
EDJ91352	CGSHi22421_04593	putative HTH-type transcriptional regulator [Ensembl]....	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0006808	regulation of nitrogen utilization	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
BP	GO:0009092	homoserine metabolic process	IEP	Enrichment
MF	GO:0010309	acireductone dioxygenase [iron(II)-requiring] activity	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0019346	transsulfuration	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
BP	GO:0050667	homocysteine metabolic process	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
MF	GO:0051287	NAD binding	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	66	269
IPR000847	Tscrpt_reg_HTH_LysR	2	39

External Links

No external refs found!