AGT23557 (N559_1823)

Aliases : N559_1823

Description : HTH-type transcriptional regulator cbl [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT23557
Cluster HCCA: Cluster_11

Target Alias Description ECC score Gene Family Method Actions
AAC75049 cbl, b1987 ssuEADCB/tauABCD operon transcriptional activator... 0.1 OrthoFinder
AAC75050 nac, b1988 nitrogen assimilation regulon transcriptional regulator;... 0.07 OrthoFinder
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.05 OrthoFinder
AAL20406 STM1487, ynfL putative LysR family transcriptional regulator... 0.03 OrthoFinder
AAL20631 STM1713, cysB transcriptional regulator for cysteine regulon... 0.03 OrthoFinder
AEA94055 OG1RF_11368 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AKI50286 L2625_02454 transcriptional regulator, LysR family [Ensembl]. LysR,... 0.08 OrthoFinder
CPC44234 lysR, ERS093114_00453 LysR family regulatory protein [Ensembl]. LysR substrate... 0.03 OrthoFinder
CPD33378 gltC, ERS093114_02589 Transcription activator of glutamate synthase operon... 0.04 OrthoFinder
EDJ91352 CGSHi22421_04593 putative HTH-type transcriptional regulator [Ensembl].... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0006808 regulation of nitrogen utilization IEP Enrichment
BP GO:0006810 transport IEP Enrichment
BP GO:0009092 homoserine metabolic process IEP Enrichment
MF GO:0010309 acireductone dioxygenase [iron(II)-requiring] activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
BP GO:0019346 transsulfuration IEP Enrichment
MF GO:0036094 small molecule binding IEP Enrichment
BP GO:0050667 homocysteine metabolic process IEP Enrichment
BP GO:0051179 localization IEP Enrichment
BP GO:0051234 establishment of localization IEP Enrichment
MF GO:0051287 NAD binding IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
InterPro domains Description Start Stop
IPR005119 LysR_subst-bd 66 269
IPR000847 Tscrpt_reg_HTH_LysR 2 39
No external refs found!