CCL17066 (opuCC, BN171_1180002)

Aliases : opuCC, BN171_1180002

Description : ABC-type transport system, glycine betaine/carnitine/choline permease [Ensembl]. Substrate binding domain of ABC-type glycine betaine transport system, Binding-protein-dependent transport system inner membrane component [Interproscan].

Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCL17066
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AAC75191	yehY, b2130	putative ABC transporter permease [Ensembl]....	0.12	OrthoFinder
AAL00480	spr1677, proWX	ABC transporter membrane-spanning permease-choline...	0.01	OrthoFinder
AAL20411	STM1492	putative binding-protein-dependent transport system...	0.05	OrthoFinder
AAL20412	STM1493	putative periplasmic component [Ensembl]. Substrate...	0.11	OrthoFinder
AAL21069	STM2165, yehZ	putative ABC superfamily transport protein (bind_prot)...	0.01	OrthoFinder
AEA93099	OG1RF_10412	ABC superfamily ATP binding cassette transporter,...	0.02	OrthoFinder
AGT23431	N559_1689	glycine betaine/choline ABC transporter membrane protein...	0.01	OrthoFinder
AKI49419	bilEB, L2625_01519	bile exclusion locus B [Ensembl]. ABC-type glycine...	0.01	OrthoFinder
AKI49422	opuCD, L2625_01522	glycine betaine/L-proline ABC transporter, permease...	0.01	OrthoFinder
AKI49423	opuCC, L2625_01523	glycine betaine/L-proline ABC transporter, glycine...	0.01	OrthoFinder
AKI49424	opuCB, L2625_01524	glycine betaine/L-proline ABC transporter, permease...	0.02	OrthoFinder
CCL19669	BN171_3370003	ABC-type transport system, glycine...	0.02	OrthoFinder
CPD18769	opuCB, ERS093114_02235	Osmotically activated L-carnitine/choline ABC...	1.0	OrthoFinder
CPD18810	opuCC_2, ERS093114_02236	Osmotically activated L-carnitine/choline ABC...	0.33	OrthoFinder
CRO00991	opuCB_1	Glycine betaine/carnitine/choline transport system...	0.04	OrthoFinder
CRO01020	osmF	Putative osmoprotectant uptake system substrate-binding...	0.03	OrthoFinder
CRO01052	opuCB_2	Glycine betaine/carnitine/choline transport system...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022857	transmembrane transporter activity	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0043190	ATP-binding cassette (ABC) transporter complex	IEA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
CC	GO:0098533	ATPase dependent transmembrane transport complex	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
CC	GO:1902495	transmembrane transporter complex	None	Extended
CC	GO:1904949	ATPase complex	None	Extended
CC	GO:1990351	transporter complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Start	Stop
IPR000515	MetI-like	15	173
IPR007210	ABC_Gly_betaine_transp_sub-bd	225	487

External Links

UniProtKB	U3WSU5

CCL17066 (opuCC, BN171_1180002)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation