CCL17066 (opuCC, BN171_1180002)

Aliases : opuCC, BN171_1180002

Description : ABC-type transport system, glycine betaine/carnitine/choline permease [Ensembl]. Substrate binding domain of ABC-type glycine betaine transport system, Binding-protein-dependent transport system inner membrane component [Interproscan].

Gene families : OG_02_0000079 (OrthoFinder) Phylogenetic Tree(s): OG0000079_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CCL17066
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AAC75191 yehY, b2130 putative ABC transporter permease [Ensembl].... 0.12 OrthoFinder
AAL00480 spr1677, proWX ABC transporter membrane-spanning permease-choline... 0.01 OrthoFinder
AAL20411 STM1492 putative binding-protein-dependent transport system... 0.05 OrthoFinder
AAL20412 STM1493 putative periplasmic component [Ensembl]. Substrate... 0.11 OrthoFinder
AAL21069 STM2165, yehZ putative ABC superfamily transport protein (bind_prot)... 0.01 OrthoFinder
AEA93099 OG1RF_10412 ABC superfamily ATP binding cassette transporter,... 0.02 OrthoFinder
AGT23431 N559_1689 glycine betaine/choline ABC transporter membrane protein... 0.01 OrthoFinder
AKI49419 bilEB, L2625_01519 bile exclusion locus B [Ensembl]. ABC-type glycine... 0.01 OrthoFinder
AKI49422 opuCD, L2625_01522 glycine betaine/L-proline ABC transporter, permease... 0.01 OrthoFinder
AKI49423 opuCC, L2625_01523 glycine betaine/L-proline ABC transporter, glycine... 0.01 OrthoFinder
AKI49424 opuCB, L2625_01524 glycine betaine/L-proline ABC transporter, permease... 0.02 OrthoFinder
CCL19669 BN171_3370003 ABC-type transport system, glycine... 0.02 OrthoFinder
CPD18769 opuCB, ERS093114_02235 Osmotically activated L-carnitine/choline ABC... 1.0 OrthoFinder
CPD18810 opuCC_2, ERS093114_02236 Osmotically activated L-carnitine/choline ABC... 0.33 OrthoFinder
CRO00991 opuCB_1 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder
CRO01020 osmF Putative osmoprotectant uptake system substrate-binding... 0.03 OrthoFinder
CRO01052 opuCB_2 Glycine betaine/carnitine/choline transport system... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000515 MetI-like 15 173
IPR007210 ABC_Gly_betaine_transp_sub-bd 225 487
UniProtKB U3WSU5