AGT24217 (N559_2535)


Aliases : N559_2535

Description : putative sugar isomerase [Ensembl]. Helix-turn-helix domain, SIS domain, rpiR family [InterProScan].


Gene families : OG_02_0000035 (OrthoFinder) Phylogenetic Tree(s): OG0000035_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24217
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AAC74923 yebK, b1853 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AAC77050 alsR, b4089 d-allose-inducible als operon transcriptional repressor;... 0.06 OrthoFinder
AAL20058 STM1127 putative transcriptional regulator [Ensembl]. SIS... 0.03 OrthoFinder
AAL20803 STM1887, yebK putative transcriptional regulator [Ensembl]. SIS... 0.02 OrthoFinder
AEA92712 OG1RF_10025 phosphosugar-binding transcriptional regulator... 0.03 OrthoFinder
AKI48471 L2625_00533 SIS domain protein [Ensembl]. Sugar isomerase (SIS),... 0.03 OrthoFinder
CPC96072 ybbH_1, ERS093114_01732 RpiR family transcriptional regulator [Ensembl]. SIS... 0.03 OrthoFinder
CRP05388 ybbH_1 putative HTH-type transcriptional regulator YbbH... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0097367 carbohydrate derivative binding IEA Interproscan
BP GO:1901135 carbohydrate derivative metabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
MF GO:0008987 quinolinate synthetase A activity IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009435 NAD biosynthetic process IEP Enrichment
MF GO:0010181 FMN binding IEP Enrichment
BP GO:0015858 nucleoside transport IEP Enrichment
BP GO:0015931 nucleobase-containing compound transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0034257 nicotinamide riboside transmembrane transporter activity IEP Enrichment
BP GO:0034258 nicotinamide riboside transport IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
BP GO:0072524 pyridine-containing compound metabolic process IEP Enrichment
BP GO:0072525 pyridine-containing compound biosynthetic process IEP Enrichment
BP GO:1901264 carbohydrate derivative transport IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR000281 HTH_RpiR 3 72
IPR001347 SIS_dom 126 245
No external refs found!