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  5. AGT24251

AGT24251 (N559_2570)


Aliases : N559_2570

Description : putative ribose/xylose/arabinose/galactoside ABC-type transport system permease component [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24251
Cluster HCCA: Cluster_18

Target Alias Description ECC score Gene Family Method Actions
AAC75209 mglC, b2148 methyl-galactoside transporter subunit [Ensembl].... 0.03 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.07 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.05 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AGT23414 N559_1670 beta-methylgalactoside transporter inner membrane... 0.06 OrthoFinder
AGT25473 N559_3837 sugar ABC transport system permease component [Ensembl]. 0.04 OrthoFinder
AGT26697 N559_5123 ribose ABC transporter permease protein [Ensembl]. 0.06 OrthoFinder
CCL17792 BN171_1800015 ABC-type transport system, sugar-family permease... 0.03 OrthoFinder
CCL18508 rbsC, BN171_240013 ABC-type transport system, ribose-specific permease... 0.03 OrthoFinder
CRN86499 rbsC Ribose transport system permease protein RbsC [Ensembl].... 0.05 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity IEP Enrichment
MF GO:0003995 acyl-CoA dehydrogenase activity IEP Enrichment
BP GO:0006082 organic acid metabolic process IEP Enrichment
BP GO:0006525 arginine metabolic process IEP Enrichment
BP GO:0006527 arginine catabolic process IEP Enrichment
BP GO:0006629 lipid metabolic process IEP Enrichment
BP GO:0006631 fatty acid metabolic process IEP Enrichment
BP GO:0006635 fatty acid beta-oxidation IEP Enrichment
BP GO:0006805 xenobiotic metabolic process IEP Enrichment
MF GO:0008198 ferrous iron binding IEP Enrichment
MF GO:0008410 CoA-transferase activity IEP Enrichment
MF GO:0008791 arginine N-succinyltransferase activity IEP Enrichment
MF GO:0009015 N-succinylarginine dihydrolase activity IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009062 fatty acid catabolic process IEP Enrichment
BP GO:0009063 cellular amino acid catabolic process IEP Enrichment
BP GO:0009064 glutamine family amino acid metabolic process IEP Enrichment
BP GO:0009065 glutamine family amino acid catabolic process IEP Enrichment
BP GO:0010124 phenylacetate catabolic process IEP Enrichment
BP GO:0016042 lipid catabolic process IEP Enrichment
BP GO:0016054 organic acid catabolic process IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016746 acyltransferase activity IEP Enrichment
MF GO:0016747 acyltransferase activity, transferring groups other than amino-acyl groups IEP Enrichment
MF GO:0016748 succinyltransferase activity IEP Enrichment
MF GO:0016749 N-succinyltransferase activity IEP Enrichment
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP Enrichment
MF GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines IEP Enrichment
BP GO:0019395 fatty acid oxidation IEP Enrichment
BP GO:0019752 carboxylic acid metabolic process IEP Enrichment
BP GO:0030258 lipid modification IEP Enrichment
BP GO:0032787 monocarboxylic acid metabolic process IEP Enrichment
BP GO:0033539 fatty acid beta-oxidation using acyl-CoA dehydrogenase IEP Enrichment
BP GO:0034440 lipid oxidation IEP Enrichment
BP GO:0042178 xenobiotic catabolic process IEP Enrichment
BP GO:0042537 benzene-containing compound metabolic process IEP Enrichment
BP GO:0043436 oxoacid metabolic process IEP Enrichment
BP GO:0044242 cellular lipid catabolic process IEP Enrichment
BP GO:0044248 cellular catabolic process IEP Enrichment
BP GO:0044255 cellular lipid metabolic process IEP Enrichment
BP GO:0044281 small molecule metabolic process IEP Enrichment
BP GO:0044282 small molecule catabolic process IEP Enrichment
BP GO:0046395 carboxylic acid catabolic process IEP Enrichment
MF GO:0046917 triphosphoribosyl-dephospho-CoA synthase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:0072329 monocarboxylic acid catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
BP GO:1901605 alpha-amino acid metabolic process IEP Enrichment
BP GO:1901606 alpha-amino acid catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 45 309
No external refs found!