AGT24252 (N559_2572)

Aliases : N559_2572

Description : periplasmic binding protein/LacI transcriptional regulator [Ensembl]. Periplasmic binding protein-like domain, LacI-type HTH domain, lacI family [InterProScan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT24252
Cluster HCCA: Cluster_15

Target Alias Description ECC score Gene Family Method Actions
AAC75212 galS, b2151 galactose-and fucose-inducible galactose regulon... 0.04 OrthoFinder
AAC76776 rbsR, b3753 transcriptional repressor of ribose metabolism... 0.1 OrthoFinder
AGT22953 N559_1185 ascBF operon repressor [Ensembl]. Periplasmic binding... 0.03 OrthoFinder
AGT26694 N559_5120 ribose operon repressor [Ensembl]. Periplasmic binding... 0.05 OrthoFinder
CRN86478 rbsR Ribose operon repressor [Ensembl]. Bacterial regulatory... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
MF GO:0050661 NADP binding IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
InterPro domains Description Start Stop
IPR000843 HTH_LacI 12 56
No external refs found!