AGT24266 (N559_2588)

Aliases : N559_2588

Description : LysR substrate binding domain protein [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT24266
Cluster	HCCA: Cluster_42

Target	Alias	Description	ECC score	Gene Family Method
AAC74869	dmlR, b1799	transcriptional activator of dmlA [Ensembl]. LysR...	0.05	OrthoFinder
AAC76275	aaeR, b3243	transcriptional regulator for aaeXAB operon [Ensembl]....	0.06	OrthoFinder
AGT22715	N559_0927	LysR family transcriptional regulator protein [Ensembl]....	0.07	OrthoFinder
AGT23444	N559_1702	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT24929	N559_3271	putative LysR-family transcriptional regulator...	0.04	OrthoFinder
CRO33942	dmlR_9	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
KNA59855	VCV51_032266	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA59999	VCV51_032411	LysR substrate binding domain-containing protein...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0008134	transcription factor binding	IEP	Enrichment
BP	GO:0009060	aerobic respiration	IEP	Enrichment
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Enrichment
BP	GO:0019646	aerobic electron transport chain	IEP	Enrichment
BP	GO:0022904	respiratory electron transport chain	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment
BP	GO:0045333	cellular respiration	IEP	Enrichment
CC	GO:0070069	cytochrome complex	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	92	297
IPR000847	Tscrpt_reg_HTH_LysR	10	67

External Links

No external refs found!