AGT24793 (N559_3132)


Aliases : N559_3132

Description : LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24793
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AAC74357 cysB, b1275 N-acetylserine-responsive cysteine regulon... 0.05 OrthoFinder
AAC75218 yeiE, b2157 putative DNA-binding transcriptional regulator... 0.03 OrthoFinder
AAC75458 xapR, b2405 transcriptional activator of xapAB [Ensembl]. LysR... 0.03 OrthoFinder
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AAC76609 yiaU, b3585 putative DNA-binding transcriptional regulator... 0.06 OrthoFinder
AAL21995 STM3121 putative LysR family transcriptional regulator... 0.01 OrthoFinder
AEA93337 OG1RF_10650 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT23447 N559_1705 LysR family transcriptional regulator [Ensembl]. LysR... 0.04 OrthoFinder
AKI49729 gltC, L2625_01870 transcriptional activator of the glutamate synthase... 0.02 OrthoFinder
CCL17254 BN171_1410016 Transcriptional regulator, LysR family [Ensembl]. LysR... 0.03 OrthoFinder
CCL18040 BN171_2040005 Transcriptional regulator, LysR family [Ensembl]. LysR... 0.03 OrthoFinder
CCL18208 BN171_2160004 Transcriptional regulator, LysR family [Ensembl]. LysR... 0.03 OrthoFinder
CRO37348 benM_3 Ben and cat operon transcriptional regulator [Ensembl].... 0.03 OrthoFinder
CRO43121 cmpR_1 HTH-type transcriptional activator CmpR [Ensembl]. LysR... 0.03 OrthoFinder
CRO80200 cynR_3 Cyn operon transcriptional activator [Ensembl]. LysR... 0.02 OrthoFinder
CRO86371 oxyR_2 Morphology and auto-aggregation control protein... 0.01 OrthoFinder
CRP00540 cysL_3 CysJI operon transcriptional activator [Ensembl]. LysR... 0.02 OrthoFinder
CRP01952 cmpR_2 HTH-type transcriptional activator CmpR [Ensembl]. LysR... 0.01 OrthoFinder
CRP03013 gltC_5 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.04 OrthoFinder
CRP53545 cynR_8 Cyn operon transcriptional activator [Ensembl]. LysR... 0.02 OrthoFinder
KNA54936 VCV51_031768 LysR substrate binding domain-containing protein... 0.03 OrthoFinder
KNA59752 VCV51_032447 lysR family Bacterial regulatory helix-turn-helix... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004797 thymidine kinase activity IEP Enrichment
MF GO:0005488 binding IEP Enrichment
BP GO:0006269 DNA replication, synthesis of RNA primer IEP Enrichment
MF GO:0015105 arsenite transmembrane transporter activity IEP Enrichment
BP GO:0015700 arsenite transport IEP Enrichment
MF GO:0019136 deoxynucleoside kinase activity IEP Enrichment
MF GO:0019206 nucleoside kinase activity IEP Enrichment
MF GO:0031072 heat shock protein binding IEP Enrichment
MF GO:0034618 arginine binding IEP Enrichment
MF GO:0097159 organic cyclic compound binding IEP Enrichment
MF GO:1901363 heterocyclic compound binding IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 3 62
IPR005119 LysR_subst-bd 87 292
No external refs found!