AGT24818 (N559_3158)


Aliases : N559_3158

Description : AraC family transcriptional regulator [Ensembl]. Helix-turn-helix domain, AraC-like ligand binding domain, DNA binding HTH domain, AraC-type arabinose-binding/dimerisation domain [InterProScan].


Gene families : OG_02_0001256 (OrthoFinder) Phylogenetic Tree(s): OG0001256_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT24818
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
KNA59906 VCV51_032317 AraC-like ligand binding domain-containing protein... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004529 exodeoxyribonuclease activity IEP Enrichment
MF GO:0004536 deoxyribonuclease activity IEP Enrichment
BP GO:0005984 disaccharide metabolic process IEP Enrichment
BP GO:0005991 trehalose metabolic process IEP Enrichment
BP GO:0005992 trehalose biosynthetic process IEP Enrichment
MF GO:0008852 exodeoxyribonuclease I activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016796 exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016895 exodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
BP GO:0046351 disaccharide biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR018060 HTH_AraC 189 264
IPR003313 AraC-bd 20 145
No external refs found!