AGT25335 (N559_3695)

Aliases : N559_3695

Description : putative periplasmic binding protein/LacI transcriptional regulator [Ensembl]. Periplasmic binding protein-like domain, LacI-type HTH domain, lacI family [InterProScan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AGT25335
Cluster	HCCA: Cluster_46

Target	Alias	Description	ECC score	Gene Family Method
AAC74402	ycjW, b1320	LacI family putative transcriptional repressor...	0.01	OrthoFinder
AAL21246	STM2345	putative transcriptional regulator [Ensembl]. Bacterial...	0.07	OrthoFinder
AAL21887	STM3011, galR	transcriptional repressor of galETK operon [Ensembl]....	0.05	OrthoFinder
AAL22744	STM3886, rbsR	transcriptional repressor for rbs operon (GalR/LacI...	0.05	OrthoFinder
AAL22934	STM4094, cytR	GalR/LacI family transcriptional repressor [Ensembl]....	0.03	OrthoFinder
AEA93367	OG1RF_10680	LacI family sugar-binding transcriptional regulator...	0.02	OrthoFinder
AKI48007	L2625_00032	transcriptional regulator, LacI family [Ensembl]....	0.04	OrthoFinder
CCL16946	BN171_1020013	Transcriptional regulator, LacI family [Ensembl]....	0.03	OrthoFinder
KNA56019	VCV51_030935	lacI family Bacterial regulatory protein [Ensembl]....	0.03	OrthoFinder
KNA60659	VCV51_032098	lacI family Bacterial regulatory protein [Ensembl]....	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004592	pantoate-beta-alanine ligase activity	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008374	O-acyltransferase activity	IEP	Enrichment
MF	GO:0008641	ubiquitin-like modifier activating enzyme activity	IEP	Enrichment
MF	GO:0008811	chloramphenicol O-acetyltransferase activity	IEP	Enrichment
BP	GO:0009060	aerobic respiration	IEP	Enrichment
BP	GO:0015939	pantothenate metabolic process	IEP	Enrichment
BP	GO:0015940	pantothenate biosynthetic process	IEP	Enrichment
BP	GO:0015980	energy derivation by oxidation of organic compounds	IEP	Enrichment
MF	GO:0016413	O-acetyltransferase activity	IEP	Enrichment
BP	GO:0019646	aerobic electron transport chain	IEP	Enrichment
MF	GO:0030151	molybdenum ion binding	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
BP	GO:0045333	cellular respiration	IEP	Enrichment
CC	GO:0070069	cytochrome complex	IEP	Enrichment
MF	GO:0070403	NAD+ binding	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000843	HTH_LacI	10	53

External Links

No external refs found!

AGT25335 (N559_3695)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation