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  5. AGT25368

AGT25368 (N559_3730)


Aliases : N559_3730

Description : periplasmic binding protein/LacI transcriptional regulator [Ensembl]. Periplasmic binding protein domain [InterProScan].


Gene families : OG_02_0000754 (OrthoFinder) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT25368
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AAC76774 rbsB, b3751 D-ribose ABC transporter periplasmic binding protein;... 0.05 OrthoFinder
AAC77049 alsB, b4088 D-allose ABC transporter periplasmic binding protein... 0.04 OrthoFinder
AAL22742 STM3884, rbsB D-ribose transport protein [Ensembl]. Periplasmic... 0.05 OrthoFinder
AGT26397 N559_4807 D-ribose periplasmic binding protein [Ensembl].... 0.04 OrthoFinder
AGT26696 N559_5122, RbsB D-ribose transporter subunit RbsB [Ensembl]. Periplasmic... 0.04 OrthoFinder
CCL18506 rbsB, BN171_240011 ABC-type transport system, ribose-specific extracellular... 0.03 OrthoFinder
CRN86559 rbsB D-ribose-binding periplasmic protein precursor... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0003842 1-pyrroline-5-carboxylate dehydrogenase activity IEP Enrichment
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Enrichment
MF GO:0004612 phosphoenolpyruvate carboxykinase (ATP) activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0050498 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, with 2-oxoglutarate as one donor, and the other dehydrogenated IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR025997 SBP_2_dom 29 282
No external refs found!