AGT25371 (N559_3733)

Aliases : N559_3733

Description : sugar ABC transporter permease [Ensembl].

Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AGT25371
Cluster HCCA: Cluster_21

Target Alias Description ECC score Gene Family Method Actions
AAC75209 mglC, b2148 methyl-galactoside transporter subunit [Ensembl].... 0.03 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AAC77047 alsC, b4086 D-allose ABC transporter permease [Ensembl].... 0.05 OrthoFinder
AAL22741 STM3883, rbsC D-ribose high-affinity transport protein (1st module,... 0.04 OrthoFinder
AGT26648 N559_5071 putative inner-membrane translocator [Ensembl]. 0.03 OrthoFinder
AGT26697 N559_5123 ribose ABC transporter permease protein [Ensembl]. 0.08 OrthoFinder
CCL17792 BN171_1800015 ABC-type transport system, sugar-family permease... 0.02 OrthoFinder
CCL18508 rbsC, BN171_240013 ABC-type transport system, ribose-specific permease... 0.02 OrthoFinder
CRN86499 rbsC Ribose transport system permease protein RbsC [Ensembl].... 0.08 OrthoFinder
EDJ91405 CGSHi22421_04858 beta-methylgalactoside transporter inner membrane... 0.05 OrthoFinder
EDJ91906 CGSHi22421_09123 D-xylose ABC transporter permease protein [Ensembl].... 0.05 OrthoFinder
EDJ91907 CGSHi22421_09128 D-xylose ABC transporter permease protein [Ensembl].... 0.06 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.07 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0004565 beta-galactosidase activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005996 monosaccharide metabolic process IEP Enrichment
BP GO:0006012 galactose metabolic process IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP Enrichment
CC GO:0009341 beta-galactosidase complex IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0015925 galactosidase activity IEP Enrichment
MF GO:0015926 glucosidase activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
BP GO:0019318 hexose metabolic process IEP Enrichment
MF GO:0022804 active transmembrane transporter activity IEP Enrichment
BP GO:0071702 organic substance transport IEP Enrichment
CC GO:1902494 catalytic complex IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 43 320
No external refs found!