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  5. CCL17254

CCL17254 (BN171_1410016)


Aliases : BN171_1410016

Description : Transcriptional regulator, LysR family [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


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Type Description Actions
Neighborhood HRR: CCL17254
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AAC76609 yiaU, b3585 putative DNA-binding transcriptional regulator... 0.04 OrthoFinder
AAC76943 oxyR, b3961 oxidative and nitrosative stress transcriptional... 0.03 OrthoFinder
AEA93759 OG1RF_11072 transcriptional regulator [Ensembl]. LysR substrate... 0.05 OrthoFinder
AEA93760 OG1RF_11073 LysR family transcriptional regulator [Ensembl]. LysR... 0.04 OrthoFinder
AGT23181 N559_1423 LysR family transcriptional regulator [Ensembl]. LysR... 0.04 OrthoFinder
AGT23255 N559_1502 putative LysR-family transcriptional regulator... 0.04 OrthoFinder
AGT23273 N559_1520, CynR DNA-binding transcriptional regulator CynR [Ensembl].... 0.04 OrthoFinder
AGT23447 N559_1705 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT24793 N559_3132 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT26606 N559_5029, OxyR DNA-binding transcriptional regulator OxyR [Ensembl].... 0.06 OrthoFinder
CRO86371 oxyR_2 Morphology and auto-aggregation control protein... 0.02 OrthoFinder
CRP03013 gltC_5 HTH-type transcriptional regulator GltC [Ensembl]. LysR... 0.04 OrthoFinder
CRP45508 benM_8 Ben and cat operon transcriptional regulator [Ensembl].... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006553 lysine metabolic process IEP Enrichment
MF GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase IEP Enrichment
BP GO:0009067 aspartate family amino acid biosynthetic process IEP Enrichment
BP GO:0009085 lysine biosynthetic process IEP Enrichment
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
BP GO:0046451 diaminopimelate metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 3 62
IPR005119 LysR_subst-bd 87 293
UniProtKB U3WWC8