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  5. AGT25966

AGT25966 (N559_4356)


Aliases : N559_4356

Description : shikimate 5-dehydrogenase [Ensembl]. Shikimate 5'-dehydrogenase C-terminal domain, Shikimate dehydrogenase substrate binding domain [InterProScan].


Gene families : OG_02_0000118 (OrthoFinder) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT25966
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
AGT23875 N559_2161 shikimate dehydrogenase substrate binding domain protein... 0.04 OrthoFinder
AKI48439 aroE-1, L2625_00498 shikimate 5-dehydrogenase [Ensembl]. Shikimate... 0.03 OrthoFinder
AKI50234 L2625_02401 shikimate 5-dehydrogenase, putative [Ensembl]. Shikimate... 0.05 OrthoFinder
CCL19173 aroE, BN171_2910008 Shikimate dehydrogenase 2 [Ensembl]. Shikimate... 0.06 OrthoFinder
CRO80494 aroE_1 Quinate/shikimate dehydrogenase [Ensembl]. Shikimate... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004764 shikimate 3-dehydrogenase (NADP+) activity IEA Interproscan
BP GO:0055114 obsolete oxidation-reduction process IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003684 damaged DNA binding IEP Enrichment
MF GO:0003700 DNA-binding transcription factor activity IEP Enrichment
MF GO:0003906 DNA-(apurinic or apyrimidinic site) endonuclease activity IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
BP GO:0006284 base-excision repair IEP Enrichment
BP GO:0006289 nucleotide-excision repair IEP Enrichment
BP GO:0006355 regulation of transcription, DNA-templated IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0009889 regulation of biosynthetic process IEP Enrichment
BP GO:0010468 regulation of gene expression IEP Enrichment
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Enrichment
MF GO:0015562 efflux transmembrane transporter activity IEP Enrichment
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Enrichment
MF GO:0016854 racemase and epimerase activity IEP Enrichment
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP Enrichment
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0019222 regulation of metabolic process IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
BP GO:0031323 regulation of cellular metabolic process IEP Enrichment
BP GO:0031326 regulation of cellular biosynthetic process IEP Enrichment
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0050789 regulation of biological process IEP Enrichment
BP GO:0050794 regulation of cellular process IEP Enrichment
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051252 regulation of RNA metabolic process IEP Enrichment
BP GO:0055085 transmembrane transport IEP Enrichment
BP GO:0060255 regulation of macromolecule metabolic process IEP Enrichment
BP GO:0065007 biological regulation IEP Enrichment
BP GO:0080090 regulation of primary metabolic process IEP Enrichment
MF GO:0140110 transcription regulator activity IEP Enrichment
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Enrichment
BP GO:2001141 regulation of RNA biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR041121 SDH_C 257 285
IPR013708 Shikimate_DH-bd_N 14 96
No external refs found!