AGT26014 (N559_4407)


Aliases : N559_4407

Description : putative HTH-type transcriptional regulator [Ensembl]. LysR substrate binding domain, lysR family [InterProScan].


Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26014
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AAC74869 dmlR, b1799 transcriptional activator of dmlA [Ensembl]. LysR... 0.06 OrthoFinder
AAC76275 aaeR, b3243 transcriptional regulator for aaeXAB operon [Ensembl].... 0.05 OrthoFinder
AAL22236 STM3367, yhcS putative LysR family transcriptional regulator... 0.03 OrthoFinder
AAL22467 STM3607, yhjC putative LysR family transcriptional regulator... 0.04 OrthoFinder
AGT24225 N559_2543 LysR family transcriptional regulator [Ensembl]. LysR... 0.04 OrthoFinder
AGT24244 N559_2563 transcriptional regulator LysR family [Ensembl]. LysR... 0.03 OrthoFinder
CRN86190 dmlR_3 D-malate degradation protein R [Ensembl]. LysR substrate... 0.04 OrthoFinder
CRO10861 dmlR_7 D-malate degradation protein R [Ensembl]. LysR substrate... 0.04 OrthoFinder
CRO40258 dmlR_13 D-malate degradation protein R [Ensembl]. LysR substrate... 0.04 OrthoFinder
CRO42652 dmlR_14 D-malate degradation protein R [Ensembl]. LysR substrate... 0.01 OrthoFinder
CRO61031 dmlR_17 D-malate degradation protein R [Ensembl]. LysR substrate... 0.02 OrthoFinder
CRP22590 dmlR_24 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRP37683 dmlR_29 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRP53621 dmlR_30 D-malate degradation protein R [Ensembl]. LysR substrate... 0.03 OrthoFinder
CRP78779 dmlR_35 D-malate degradation protein R [Ensembl]. LysR substrate... 0.05 OrthoFinder
KNA55708 VCV51_031016 LysR substrate binding domain-containing protein... 0.04 OrthoFinder
KNA59855 VCV51_032266 LysR substrate binding domain-containing protein... 0.06 OrthoFinder
KNA59858 VCV51_032269 LysR substrate binding domain-containing protein... 0.03 OrthoFinder
KNA59999 VCV51_032411 LysR substrate binding domain-containing protein... 0.05 OrthoFinder
KNA60706 VCV51_032145 LysR substrate binding domain-containing protein... 0.05 OrthoFinder
KNA60960 VCV51_031935 LysR substrate binding domain-containing protein... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000155 phosphorelay sensor kinase activity IEP Enrichment
BP GO:0000160 phosphorelay signal transduction system IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003951 NAD+ kinase activity IEP Enrichment
MF GO:0004672 protein kinase activity IEP Enrichment
MF GO:0004673 protein histidine kinase activity IEP Enrichment
MF GO:0005283 amino acid:sodium symporter activity IEP Enrichment
MF GO:0005343 organic acid:sodium symporter activity IEP Enrichment
MF GO:0005416 amino acid:cation symporter activity IEP Enrichment
BP GO:0006739 NADP metabolic process IEP Enrichment
BP GO:0006741 NADP biosynthetic process IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
BP GO:0007165 signal transduction IEP Enrichment
MF GO:0008509 anion transmembrane transporter activity IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
MF GO:0015175 neutral amino acid transmembrane transporter activity IEP Enrichment
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Enrichment
MF GO:0015370 solute:sodium symporter activity IEP Enrichment
MF GO:0015655 alanine:sodium symporter activity IEP Enrichment
BP GO:0015804 neutral amino acid transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016301 kinase activity IEP Enrichment
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP Enrichment
MF GO:0016740 transferase activity IEP Enrichment
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Enrichment
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016775 phosphotransferase activity, nitrogenous group as acceptor IEP Enrichment
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP Enrichment
BP GO:0019362 pyridine nucleotide metabolic process IEP Enrichment
BP GO:0019363 pyridine nucleotide biosynthetic process IEP Enrichment
MF GO:0022858 alanine transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
BP GO:0032328 alanine transport IEP Enrichment
MF GO:0033739 preQ1 synthase activity IEP Enrichment
BP GO:0035556 intracellular signal transduction IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0046496 nicotinamide nucleotide metabolic process IEP Enrichment
MF GO:0046873 metal ion transmembrane transporter activity IEP Enrichment
MF GO:0140096 catalytic activity, acting on a protein IEP Enrichment
MF GO:0140299 small molecule sensor activity IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 8 65
IPR005119 LysR_subst-bd 92 296
No external refs found!