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AGT26146 (N559_4543)


Aliases : N559_4543

Description : ribose high-affinity ABC transporter permease component [Ensembl].


Gene families : OG_02_0000052 (OrthoFinder) Phylogenetic Tree(s): OG0000052_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26146
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AAC74587 lsrC, b1514 autoinducer 2 import system permease protein [Ensembl].... 0.05 OrthoFinder
AAC74588 lsrD, b1515 autoinducer 2 import system permease protein [Ensembl].... 0.05 OrthoFinder
AAC75209 mglC, b2148 methyl-galactoside transporter subunit [Ensembl].... 0.06 OrthoFinder
AAC76592 xylH, b3568 D-xylose ABC transporter permease [Ensembl].... 0.07 OrthoFinder
AAC76773 rbsC, b3750 D-ribose ABC transporter permease [Ensembl].... 0.07 OrthoFinder
AAC77187 ytfT, b4230 putative sugar ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAC77188 yjfF, b4231 putative sugar ABC transporter permease [Ensembl].... 0.05 OrthoFinder
AAL22915 STM4075, ydeY putative sugar transport protein [Ensembl].... 0.04 OrthoFinder
AAL22916 STM4076, ydeZ putative sugar transport protein [Ensembl].... 0.05 OrthoFinder
AAT48138 araH, b4460 L-arabinose ABC transporter permease [Ensembl].... 0.06 OrthoFinder
AGT22462 N559_0666 putative transport system permease component [Ensembl]. 0.06 OrthoFinder
AGT23414 N559_1670 beta-methylgalactoside transporter inner membrane... 0.04 OrthoFinder
AGT25326 N559_3686 putative ABC-type sugar transport system permease... 0.04 OrthoFinder
AGT25327 N559_3687 putative inner-membrane translocator [Ensembl]. 0.04 OrthoFinder
AGT25343 N559_3703 inner-membrane translocator [Ensembl]. 0.04 OrthoFinder
AGT26396 N559_4806 putative carbohydrate ABC transport system permease [Ensembl]. 0.06 OrthoFinder
AGT26697 N559_5123 ribose ABC transporter permease protein [Ensembl]. 0.05 OrthoFinder
CRN86499 rbsC Ribose transport system permease protein RbsC [Ensembl].... 0.05 OrthoFinder
KNA60662 VCV51_032101 branched-chain amino acid transport system/permease... 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016021 integral component of membrane IEA Interproscan
MF GO:0022857 transmembrane transporter activity IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
BP GO:0006073 cellular glucan metabolic process IEP Enrichment
MF GO:0008194 UDP-glycosyltransferase activity IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
BP GO:0008643 carbohydrate transport IEP Enrichment
MF GO:0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity IEP Enrichment
BP GO:0009250 glucan biosynthetic process IEP Enrichment
BP GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system IEP Enrichment
MF GO:0015144 carbohydrate transmembrane transporter activity IEP Enrichment
MF GO:0016759 cellulose synthase activity IEP Enrichment
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Enrichment
BP GO:0030243 cellulose metabolic process IEP Enrichment
BP GO:0030244 cellulose biosynthetic process IEP Enrichment
MF GO:0030551 cyclic nucleotide binding IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
MF GO:0035251 UDP-glucosyltransferase activity IEP Enrichment
MF GO:0035438 cyclic-di-GMP binding IEP Enrichment
BP GO:0044042 glucan metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
MF GO:0046527 glucosyltransferase activity IEP Enrichment
BP GO:0051273 beta-glucan metabolic process IEP Enrichment
BP GO:0051274 beta-glucan biosynthetic process IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR001851 ABC_transp_permease 38 305
No external refs found!