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  5. AGT26397

AGT26397 (N559_4807)


Aliases : N559_4807

Description : D-ribose periplasmic binding protein [Ensembl]. Periplasmic binding protein domain [InterProScan].


Gene families : OG_02_0000754 (OrthoFinder) Phylogenetic Tree(s): OG0000754_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26397
Cluster HCCA: Cluster_51

Target Alias Description ECC score Gene Family Method Actions
AAC76774 rbsB, b3751 D-ribose ABC transporter periplasmic binding protein;... 0.08 OrthoFinder
AAC77049 alsB, b4088 D-allose ABC transporter periplasmic binding protein... 0.05 OrthoFinder
AAL22742 STM3884, rbsB D-ribose transport protein [Ensembl]. Periplasmic... 0.06 OrthoFinder
AGT24254 N559_2574 putative ABC transporter, nucleotide binding/ATPase... 0.05 OrthoFinder
AGT25368 N559_3730 periplasmic binding protein/LacI transcriptional... 0.04 OrthoFinder
AGT25475 N559_3839 putative periplasmic binding protein [Ensembl].... 0.05 OrthoFinder
AGT26696 N559_5122, RbsB D-ribose transporter subunit RbsB [Ensembl]. Periplasmic... 0.07 OrthoFinder
CCL17793 BN171_1800016 ABC-type transport system, sugar-family extracellular... 0.03 OrthoFinder
CCL18506 rbsB, BN171_240011 ABC-type transport system, ribose-specific extracellular... 0.03 OrthoFinder
CRN86559 rbsB D-ribose-binding periplasmic protein precursor... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Enrichment
MF GO:0003824 catalytic activity IEP Enrichment
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Enrichment
MF GO:0005215 transporter activity IEP Enrichment
MF GO:0005506 iron ion binding IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
MF GO:0008199 ferric iron binding IEP Enrichment
MF GO:0008733 L-arabinose isomerase activity IEP Enrichment
BP GO:0009712 catechol-containing compound metabolic process IEP Enrichment
CC GO:0016021 integral component of membrane IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016701 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen IEP Enrichment
MF GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0018576 catechol 1,2-dioxygenase activity IEP Enrichment
BP GO:0018958 phenol-containing compound metabolic process IEP Enrichment
MF GO:0019114 catechol dioxygenase activity IEP Enrichment
MF GO:0022857 transmembrane transporter activity IEP Enrichment
CC GO:0031224 intrinsic component of membrane IEP Enrichment
MF GO:0043167 ion binding IEP Enrichment
MF GO:0043169 cation binding IEP Enrichment
MF GO:0046872 metal ion binding IEP Enrichment
MF GO:0046914 transition metal ion binding IEP Enrichment
MF GO:0051213 dioxygenase activity IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
InterPro domains Description Start Stop
IPR025997 SBP_2_dom 30 285
No external refs found!