AGT26694 (N559_5120)


Aliases : N559_5120

Description : ribose operon repressor [Ensembl]. Periplasmic binding protein-like domain, LacI-type HTH domain, lacI family [InterProScan].


Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AGT26694
Cluster HCCA: Cluster_46

Target Alias Description ECC score Gene Family Method Actions
AAC75212 galS, b2151 galactose-and fucose-inducible galactose regulon... 0.06 OrthoFinder
AAC75876 galR, b2837 galactose-inducible d-galactose regulon transcriptional... 0.03 OrthoFinder
AAC76776 rbsR, b3753 transcriptional repressor of ribose metabolism... 0.19 OrthoFinder
AAC76916 cytR, b3934 Anti-activator for CytR-CRP nucleoside utilization... 0.04 OrthoFinder
AAL21095 STM2191, galS GalR/LacI family transcriptional repressor of mgl operon... 0.03 OrthoFinder
AAL21246 STM2345 putative transcriptional regulator [Ensembl]. Bacterial... 0.03 OrthoFinder
AAL22744 STM3886, rbsR transcriptional repressor for rbs operon (GalR/LacI... 0.11 OrthoFinder
AAL22934 STM4094, cytR GalR/LacI family transcriptional repressor [Ensembl].... 0.06 OrthoFinder
AGT23411 N559_1667, GalS DNA-binding transcriptional regulator GalS [Ensembl].... 0.04 OrthoFinder
AGT24252 N559_2572 periplasmic binding protein/LacI transcriptional... 0.05 OrthoFinder
AGT25422 N559_3786 transcriptional regulator, LacI family [Ensembl].... 0.04 OrthoFinder
CCG26537 MalR Maltose operon transcriptional repressor MalR,LacI... 0.03 OrthoFinder
CRN86478 rbsR Ribose operon repressor [Ensembl]. Bacterial regulatory... 0.08 OrthoFinder
KNA55224 VCV51_031069 lacI family Bacterial regulatory protein [Ensembl].... 0.02 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0009246 enterobacterial common antigen biosynthetic process IEP Enrichment
BP GO:0009890 negative regulation of biosynthetic process IEP Enrichment
BP GO:0009892 negative regulation of metabolic process IEP Enrichment
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Enrichment
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0031324 negative regulation of cellular metabolic process IEP Enrichment
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Enrichment
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0046378 enterobacterial common antigen metabolic process IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
BP GO:0048519 negative regulation of biological process IEP Enrichment
BP GO:0048523 negative regulation of cellular process IEP Enrichment
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Enrichment
BP GO:0051253 negative regulation of RNA metabolic process IEP Enrichment
BP GO:0051259 protein complex oligomerization IEP Enrichment
BP GO:0070206 protein trimerization IEP Enrichment
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Enrichment
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Enrichment
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000843 HTH_LacI 1 45
No external refs found!