AHY39298 (CJ8421_00115)

Aliases : CJ8421_00115

Description : RNA pseudouridylate synthase [Ensembl]. RNA pseudouridylate synthase [Interproscan].

Gene families : OG_02_0000046 (OrthoFinder) Phylogenetic Tree(s): OG0000046_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AHY39298
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AAL20116	STM1187, rluC	23S rRNA pseudouridylate synthase [Ensembl]. S4 domain,...	0.03	OrthoFinder
AKP15182	rluC, WX61_01129	Ribosomal large subunit pseudouridine synthase C...	0.02	OrthoFinder
CCG26588	No alias	Ribosomal large subunit pseudouridine synthase D...	0.02	OrthoFinder
CCG26788	YjbO	Similar to ribosomal large subunit pseudouridine...	0.02	OrthoFinder
CCP44304	Rv1540	Conserved hypothetical protein member of yabO/yceC/yfiI...	0.03	OrthoFinder
CPC37205	rluD, ERS093114_00227	Ribosomal large subunit pseudouridine synthase D...	0.03	OrthoFinder
CRO46859	rluC	Ribosomal large subunit pseudouridine synthase C...	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000723	telomere maintenance	IEP	Enrichment
MF	GO:0003909	DNA ligase activity	IEP	Enrichment
MF	GO:0003910	DNA ligase (ATP) activity	IEP	Enrichment
MF	GO:0004620	phospholipase activity	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006950	response to stress	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Enrichment
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Enrichment
BP	GO:0015698	inorganic anion transport	IEP	Enrichment
BP	GO:0015700	arsenite transport	IEP	Enrichment
MF	GO:0016298	lipase activity	IEP	Enrichment
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
BP	GO:0032200	telomere organization	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
MF	GO:0042910	xenobiotic transmembrane transporter activity	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051716	cellular response to stimulus	IEP	Enrichment
BP	GO:0060249	anatomical structure homeostasis	IEP	Enrichment
MF	GO:0140097	catalytic activity, acting on DNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006145	PsdUridine_synth_RsuA/RluA	59	207

External Links

No external refs found!