AKI48958 (L2625_01040)

Aliases : L2625_01040

Description : transcriptional regulator, LysR family [Ensembl]. Transcription regulator HTH, LysR [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AKI48958
Cluster	HCCA: Cluster_26

Target	Alias	Description	ECC score	Gene Family Method
AAC75462	yfeR, b2409	transcriptional regulator of yefH [Ensembl]. LysR...	0.01	OrthoFinder
AAC76943	oxyR, b3961	oxidative and nitrosative stress transcriptional...	0.03	OrthoFinder
AAK99632	spr0828, cpsY	Regulatory function on capsule expression in group B...	0.05	OrthoFinder
AEA94210	OG1RF_11523	LysR family transcriptional regulator [Ensembl]....	0.03	OrthoFinder
AEA94928	OG1RF_12241	LysR family transcriptional regulator [Ensembl]. LysR...	0.05	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT26606	N559_5029, OxyR	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.02	OrthoFinder
CCG27094	MtaR	Methionine biosynthesis and transport regulator MtaR,...	0.05	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CPC51762	oxyR, ERS093114_00680	hydrogen peroxide-inducible genes activator [Ensembl]....	0.05	OrthoFinder
CRO27185	oxyR_1	Morphology and auto-aggregation control protein...	0.03	OrthoFinder
CRO86371	oxyR_2	Morphology and auto-aggregation control protein...	0.01	OrthoFinder
CRP45508	benM_8	Ben and cat operon transcriptional regulator [Ensembl]....	0.01	OrthoFinder
EDJ90156	CGSHi22421_05987	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.03	OrthoFinder
EDJ91352	CGSHi22421_04593	putative HTH-type transcriptional regulator [Ensembl]....	0.03	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.04	OrthoFinder
KNA56848	VCV51_032860	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59413	VCV51_032593	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEP	Enrichment
BP	GO:0000160	phosphorelay signal transduction system	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0004357	glutamate-cysteine ligase activity	IEP	Enrichment
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	Enrichment
MF	GO:0004421	hydroxymethylglutaryl-CoA synthase activity	IEP	Enrichment
MF	GO:0004672	protein kinase activity	IEP	Enrichment
MF	GO:0004673	protein histidine kinase activity	IEP	Enrichment
MF	GO:0004748	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor	IEP	Enrichment
MF	GO:0004784	superoxide dismutase activity	IEP	Enrichment
BP	GO:0006259	DNA metabolic process	IEP	Enrichment
BP	GO:0006281	DNA repair	IEP	Enrichment
BP	GO:0006282	regulation of DNA repair	IEP	Enrichment
BP	GO:0006749	glutathione metabolic process	IEP	Enrichment
BP	GO:0006750	glutathione biosynthetic process	IEP	Enrichment
BP	GO:0006801	superoxide metabolic process	IEP	Enrichment
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Enrichment
BP	GO:0007165	signal transduction	IEP	Enrichment
MF	GO:0008236	serine-type peptidase activity	IEP	Enrichment
MF	GO:0008883	glutamyl-tRNA reductase activity	IEP	Enrichment
BP	GO:0009403	toxin biosynthetic process	IEP	Enrichment
BP	GO:0010035	response to inorganic substance	IEP	Enrichment
BP	GO:0010038	response to metal ion	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016301	kinase activity	IEP	Enrichment
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	Enrichment
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	IEP	Enrichment
MF	GO:0017171	serine hydrolase activity	IEP	Enrichment
BP	GO:0019184	nonribosomal peptide biosynthetic process	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
BP	GO:0033554	cellular response to stress	IEP	Enrichment
BP	GO:0035556	intracellular signal transduction	IEP	Enrichment
CC	GO:0042597	periplasmic space	IEP	Enrichment
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Enrichment
BP	GO:0046688	response to copper ion	IEP	Enrichment
MF	GO:0046912	acyltransferase, acyl groups converted into alkyl on transfer	IEP	Enrichment
BP	GO:0048583	regulation of response to stimulus	IEP	Enrichment
BP	GO:0050896	response to stimulus	IEP	Enrichment
BP	GO:0051052	regulation of DNA metabolic process	IEP	Enrichment
MF	GO:0061731	ribonucleoside-diphosphate reductase activity	IEP	Enrichment
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Enrichment
BP	GO:0080134	regulation of response to stress	IEP	Enrichment
BP	GO:0080135	regulation of cellular response to stress	IEP	Enrichment
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Enrichment
MF	GO:0140299	small molecule sensor activity	IEP	Enrichment
BP	GO:2001020	regulation of response to DNA damage stimulus	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	7	62
IPR005119	LysR_subst-bd	89	283

External Links

No external refs found!

AKI48958 (L2625_01040)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation