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ADK86862 (rpoD, MPNE_0408)


Aliases : rpoD, MPNE_0408

Description : RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000197 (OrthoFinder) Phylogenetic Tree(s): OG0000197_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ADK86862
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AGT22495 N559_0700, RpoD RNA polymerase sigma factor RpoD [Ensembl].... 0.02 OrthoFinder
AKP15973 rpoD, WX61_01945 RNA polymerase sigma factor RpoD [Ensembl]. Sigma-70... 0.05 OrthoFinder
CRO83802 rpoD Sigma-70 [Ensembl]. Sigma-70 factor, Sigma-70 region 2,... 0.07 OrthoFinder
EDJ91461 aspA, CGSHi22421_06817 aspartate ammonia-lyase [Ensembl]. Sigma-70 factor,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR007624 RNA_pol_sigma70_r3 331 411
IPR007630 RNA_pol_sigma70_r4 429 480
IPR007627 RNA_pol_sigma70_r2 252 321
No external refs found!