AAL19500 (STM0546, fimD)

Aliases : STM0546, fimD

Description : outer membrane usher protein [Ensembl]. PapC N-terminal domain, PapC C-terminal domain, Outer membrane usher protein [Interproscan].

Gene families : OG_02_0000166 (OrthoFinder) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL19500
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AAC73634	sfmD, b0532	putative outer membrane export usher protein [Ensembl]....	0.05	OrthoFinder
AAC74026	elfC, b0940	putative outer membrane fimbrial subunit export usher...	0.02	OrthoFinder
AAC76178	yraJ, b3144	putative outer membrane protein [Ensembl]. PapC...	0.04	OrthoFinder
AAC77273	fimD, b4317	fimbrial usher outer membrane porin protein; FimCD...	0.05	OrthoFinder
AAL18987	STM0023, bcfC	fimbrial usher [Ensembl]. PapC N-terminal domain, PapC...	0.04	OrthoFinder
AAL19292	STM0338, stbC	putative fimbriae; usher [Ensembl]. PapC N-terminal...	0.04	OrthoFinder
AAL21053	STM2150, stcC	putative outer membrane protein [Ensembl]. PapC...	0.05	OrthoFinder
AGT22732	N559_0945, FimD	outer membrane usher protein FimD [Ensembl]. PapC...	0.05	OrthoFinder
AGT25491	N559_3855	fimbrial usher protein [Ensembl]. PapC N-terminal...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009297	pilus assembly	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015288	porin activity	None	Extended
MF	GO:0015473	fimbrial usher porin activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022829	wide pore channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
BP	GO:0030030	cell projection organization	None	Extended
BP	GO:0030031	cell projection assembly	None	Extended
BP	GO:0043711	pilus organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004386	helicase activity	IEP	Enrichment
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Enrichment
BP	GO:0007155	cell adhesion	IEP	Enrichment
MF	GO:0008094	ATPase, acting on DNA	IEP	Enrichment
CC	GO:0009289	pilus	IEP	Enrichment
BP	GO:0009889	regulation of biosynthetic process	IEP	Enrichment
BP	GO:0010468	regulation of gene expression	IEP	Enrichment
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Enrichment
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0019222	regulation of metabolic process	IEP	Enrichment
BP	GO:0022610	biological adhesion	IEP	Enrichment
BP	GO:0031323	regulation of cellular metabolic process	IEP	Enrichment
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Enrichment
CC	GO:0042995	cell projection	IEP	Enrichment
BP	GO:0045229	external encapsulating structure organization	IEP	Enrichment
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Enrichment
BP	GO:0051252	regulation of RNA metabolic process	IEP	Enrichment
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Enrichment
BP	GO:0071554	cell wall organization or biogenesis	IEP	Enrichment
BP	GO:0071555	cell wall organization	IEP	Enrichment
BP	GO:0080090	regulation of primary metabolic process	IEP	Enrichment
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Enrichment
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Enrichment
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR025949	PapC-like_C	788	850
IPR025885	PapC_N	39	188
IPR000015	Fimb_usher	200	778

External Links

No external refs found!

AAL19500 (STM0546, fimD)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation