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AAL19879 (STM0943, cspD)


Aliases : STM0943, cspD

Description : CspA-like protein but not cold shock induced [Ensembl]. 'Cold-shock' DNA-binding domain [Interproscan].


Gene families : OG_02_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AAL19879
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
AAC73967 cspD, b0880 inhibitor of DNA replication, cold shock protein homolog... 0.05 OrthoFinder
EDJ91079 CGSHi22421_10072 cold shock-like protein CspD [Ensembl]. 'Cold-shock'... 0.04 OrthoFinder
KNA53869 VCV51_033237, CspD cold shock domain-containing protein CspD [Ensembl].... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004470 malic enzyme activity IEP Enrichment
MF GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity IEP Enrichment
BP GO:0009166 nucleotide catabolic process IEP Enrichment
CC GO:0009279 cell outer membrane IEP Enrichment
MF GO:0015267 channel activity IEP Enrichment
MF GO:0015288 porin activity IEP Enrichment
MF GO:0016491 oxidoreductase activity IEP Enrichment
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Enrichment
MF GO:0016615 malate dehydrogenase activity IEP Enrichment
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Enrichment
CC GO:0019867 outer membrane IEP Enrichment
MF GO:0022803 passive transmembrane transporter activity IEP Enrichment
MF GO:0022829 wide pore channel activity IEP Enrichment
BP GO:0034220 ion transmembrane transport IEP Enrichment
BP GO:0055114 obsolete oxidation-reduction process IEP Enrichment
BP GO:1901292 nucleoside phosphate catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR002059 CSP_DNA-bd 3 65
No external refs found!