AAL20406 (STM1487, ynfL)

Aliases : STM1487, ynfL

Description : putative LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL20406
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AAC73441	cynR, b0338	transcriptional activator of cyn operon; autorepressor...	0.04	OrthoFinder
AAC75050	nac, b1988	nitrogen assimilation regulon transcriptional regulator;...	0.04	OrthoFinder
AAC75458	xapR, b2405	transcriptional activator of xapAB [Ensembl]. LysR...	0.07	OrthoFinder
AAL21995	STM3121	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AEA93063	OG1RF_10376	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AEA93759	OG1RF_11072	transcriptional regulator [Ensembl]. LysR substrate...	0.02	OrthoFinder
AEA93760	OG1RF_11073	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AEA94055	OG1RF_11368	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT23273	N559_1520, CynR	DNA-binding transcriptional regulator CynR [Ensembl]....	0.02	OrthoFinder
AGT23403	N559_1659	putative DNA-binding transcriptional regulator...	0.03	OrthoFinder
AGT23447	N559_1705	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23556	N559_1822	nitrogen assimilation transcriptional regulator...	0.03	OrthoFinder
AGT23557	N559_1823	HTH-type transcriptional regulator cbl [Ensembl]. LysR...	0.03	OrthoFinder
AHY40206	CJ8421_04960	putative transcriptional regulator (lysR family) protein...	0.02	OrthoFinder
AKI48437	L2625_00496	transcriptional regulator, LysR family [Ensembl]....	0.03	OrthoFinder
AKI49729	gltC, L2625_01870	transcriptional activator of the glutamate synthase...	0.04	OrthoFinder
CCL18208	BN171_2160004	Transcriptional regulator, LysR family [Ensembl]. LysR...	0.03	OrthoFinder
CRN70888	gltC_1	HTH-type transcriptional regulator GltC [Ensembl]. LysR...	0.02	OrthoFinder
CRO43121	cmpR_1	HTH-type transcriptional activator CmpR [Ensembl]. LysR...	0.04	OrthoFinder
CRO72266	cynR_2	Cyn operon transcriptional activator [Ensembl]. LysR...	0.03	OrthoFinder
CRO80200	cynR_3	Cyn operon transcriptional activator [Ensembl]. LysR...	0.05	OrthoFinder
CRP67092	catM_2	Cat operon transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
EDJ90156	CGSHi22421_05987	DNA-binding transcriptional regulator OxyR [Ensembl]....	0.02	OrthoFinder
KNA54936	VCV51_031768	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	Enrichment
MF	GO:0003941	L-serine ammonia-lyase activity	IEP	Enrichment
MF	GO:0004568	chitinase activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
MF	GO:0005488	binding	IEP	Enrichment
BP	GO:0006030	chitin metabolic process	IEP	Enrichment
BP	GO:0006032	chitin catabolic process	IEP	Enrichment
BP	GO:0006040	amino sugar metabolic process	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0015099	nickel cation transmembrane transporter activity	IEP	Enrichment
BP	GO:0015675	nickel cation transport	IEP	Enrichment
MF	GO:0016841	ammonia-lyase activity	IEP	Enrichment
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
BP	GO:0035444	nickel cation transmembrane transport	IEP	Enrichment
MF	GO:0036094	small molecule binding	IEP	Enrichment
MF	GO:0043167	ion binding	IEP	Enrichment
MF	GO:0043168	anion binding	IEP	Enrichment
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Enrichment
BP	GO:0046348	amino sugar catabolic process	IEP	Enrichment
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
MF	GO:0071949	FAD binding	IEP	Enrichment
MF	GO:0097159	organic cyclic compound binding	IEP	Enrichment
BP	GO:1901071	glucosamine-containing compound metabolic process	IEP	Enrichment
BP	GO:1901072	glucosamine-containing compound catabolic process	IEP	Enrichment
MF	GO:1901265	nucleoside phosphate binding	IEP	Enrichment
MF	GO:1901363	heterocyclic compound binding	IEP	Enrichment
MF	GO:1901681	sulfur compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000847	Tscrpt_reg_HTH_LysR	5	64
IPR005119	LysR_subst-bd	88	293

External Links

No external refs found!

AAL20406 (STM1487, ynfL)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation