AAL21890 (STM3014, lysR)

Aliases : STM3014, lysR

Description : positive LysR family transcriptional regulator [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0002373 (OrthoFinder) Phylogenetic Tree(s): OG0002373_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL21890
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method	Actions
AAC75878	lysR, b2839	transcriptional activator of lysA; autorepressor...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006012	galactose metabolic process	IEP	Enrichment
MF	GO:0008108	UDP-glucose:hexose-1-phosphate uridylyltransferase activity	IEP	Enrichment
MF	GO:0008733	L-arabinose isomerase activity	IEP	Enrichment
CC	GO:0016021	integral component of membrane	IEP	Enrichment
MF	GO:0016597	amino acid binding	IEP	Enrichment
MF	GO:0016743	carboxyl- or carbamoyltransferase activity	IEP	Enrichment
CC	GO:0031224	intrinsic component of membrane	IEP	Enrichment
MF	GO:0034618	arginine binding	IEP	Enrichment
MF	GO:0043177	organic acid binding	IEP	Enrichment
MF	GO:0070569	uridylyltransferase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	92	294
IPR000847	Tscrpt_reg_HTH_LysR	6	64

External Links

No external refs found!

AAL21890 (STM3014, lysR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation