AAL22643 (STM3785)

Aliases : STM3785

Description : putative gntR family regulatory protein [Ensembl]. UTRA domain, Bacterial regulatory proteins [Interproscan].

Gene families : OG_02_0000038 (OrthoFinder) Phylogenetic Tree(s): OG0000038_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22643
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AAC73824	mngR, b0730	transcriptional repressor for the mannosyl-D-glycerate...	0.03	OrthoFinder
AEA93786	OG1RF_11099	GntR family transcriptional regulator [Ensembl]. UTRA...	0.03	OrthoFinder
AGT21907	N559_0078	2-aminoethylphosphonate transporter repressor [Ensembl]....	0.03	OrthoFinder
AGT25134	N559_3483	putative transcriptional regulator [Ensembl]. UTRA...	0.04	OrthoFinder
AKI47996	L2625_00020	transcriptional regulator, GntR family [Ensembl]. UbiC...	0.04	OrthoFinder
AKI48332	L2625_00387	transcriptional regulator, GntR family [Ensembl]....	0.03	OrthoFinder
AKI49998	L2625_02151	transcriptional regulator, GntR family [Ensembl]. UbiC...	0.04	OrthoFinder
AKI49999	L2625_02152	transcriptional regulator, GntR family [Ensembl]. UbiC...	0.04	OrthoFinder
CCL19902	BN171_3590023	Transcriptional regulator, GntR family [Ensembl]. UTRA...	0.03	OrthoFinder
CRP78390	phnR_3	Putative transcriptional regulator of...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	IEP	Enrichment
BP	GO:0006629	lipid metabolic process	IEP	Enrichment
BP	GO:0006952	defense response	IEP	Enrichment
BP	GO:0006955	immune response	IEP	Enrichment
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Enrichment
BP	GO:0009166	nucleotide catabolic process	IEP	Enrichment
BP	GO:0009307	DNA restriction-modification system	IEP	Enrichment
BP	GO:0009607	response to biotic stimulus	IEP	Enrichment
BP	GO:0043207	response to external biotic stimulus	IEP	Enrichment
BP	GO:0044355	clearance of foreign intracellular DNA	IEP	Enrichment
BP	GO:0051707	response to other organism	IEP	Enrichment
BP	GO:0098542	defense response to other organism	IEP	Enrichment
BP	GO:0099046	clearance of foreign intracellular nucleic acids	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000524	Tscrpt_reg_HTH_GntR	12	75
IPR011663	UTRA	98	236

External Links

No external refs found!

AAL22643 (STM3785)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation