AAL22744 (STM3886, rbsR)

Aliases : STM3886, rbsR

Description : transcriptional repressor for rbs operon (GalR/LacI family) [Ensembl]. Bacterial regulatory proteins, Periplasmic binding protein-like domain [Interproscan].

Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AAL22744
Cluster	HCCA: Cluster_30

Target	Alias	Description	ECC score	Gene Family Method
AAC75212	galS, b2151	galactose-and fucose-inducible galactose regulon...	0.07	OrthoFinder
AAC76776	rbsR, b3753	transcriptional repressor of ribose metabolism...	0.13	OrthoFinder
AAC76916	cytR, b3934	Anti-activator for CytR-CRP nucleoside utilization...	0.08	OrthoFinder
AAL00724	spr1922, malR	Maltose operon transcriptional repressor [Ensembl]....	0.02	OrthoFinder
AAL21095	STM2191, galS	GalR/LacI family transcriptional repressor of mgl operon...	0.04	OrthoFinder
AGT22061	N559_0239	putative transcriptional regulator [Ensembl]....	0.03	OrthoFinder
AGT22772	N559_0986	putative transcriptional regulator [Ensembl]....	0.06	OrthoFinder
AGT22777	N559_0991, GalR	DNA-binding transcriptional regulator GalR [Ensembl]....	0.07	OrthoFinder
AGT22953	N559_1185	ascBF operon repressor [Ensembl]. Periplasmic binding...	0.04	OrthoFinder
AGT25335	N559_3695	putative periplasmic binding protein/LacI...	0.05	OrthoFinder
AGT25422	N559_3786	transcriptional regulator, LacI family [Ensembl]....	0.03	OrthoFinder
AGT26627	N559_5050, CytR	DNA-binding transcriptional regulator CytR [Ensembl]....	0.04	OrthoFinder
AGT26654	N559_5077	repressor of galETK operon [Ensembl]. Periplasmic...	0.04	OrthoFinder
AGT26694	N559_5120	ribose operon repressor [Ensembl]. Periplasmic binding...	0.11	OrthoFinder
AKI48007	L2625_00032	transcriptional regulator, LacI family [Ensembl]....	0.04	OrthoFinder
AKI48222	L2625_00274	transcriptional regulator [Ensembl]. LacI-type HTH...	0.03	OrthoFinder
AKI48687	L2625_00756	LacI family transcription regulator [Ensembl]. LacI-type...	0.04	OrthoFinder
CCG27166	No alias	Catabolite control protein A [Ensembl]. Bacterial...	0.03	OrthoFinder
CPC79767	malR, ERS093114_01340	Maltose operon transcriptional repressor MalR%2C LacI...	0.04	OrthoFinder
CRN86478	rbsR	Ribose operon repressor [Ensembl]. Bacterial regulatory...	0.04	OrthoFinder
EDJ91402	CGSHi22421_04843	HTH-type transcriptional regulator GalR [Ensembl]....	0.03	OrthoFinder
EDJ91486	CGSHi22421_06942	hypothetical protein [Ensembl]. Bacterial regulatory...	0.03	OrthoFinder
KNA60659	VCV51_032098	lacI family Bacterial regulatory protein [Ensembl]....	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Enrichment
MF	GO:0004340	glucokinase activity	IEP	Enrichment
MF	GO:0004396	hexokinase activity	IEP	Enrichment
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Enrichment
MF	GO:0005536	glucose binding	IEP	Enrichment
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Enrichment
BP	GO:0006793	phosphorus metabolic process	IEP	Enrichment
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Enrichment
BP	GO:0009056	catabolic process	IEP	Enrichment
BP	GO:0009117	nucleotide metabolic process	IEP	Enrichment
BP	GO:0009166	nucleotide catabolic process	IEP	Enrichment
BP	GO:0015858	nucleoside transport	IEP	Enrichment
BP	GO:0015931	nucleobase-containing compound transport	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
MF	GO:0019200	carbohydrate kinase activity	IEP	Enrichment
BP	GO:0019637	organophosphate metabolic process	IEP	Enrichment
MF	GO:0030246	carbohydrate binding	IEP	Enrichment
MF	GO:0048029	monosaccharide binding	IEP	Enrichment
BP	GO:0051156	glucose 6-phosphate metabolic process	IEP	Enrichment
MF	GO:0140110	transcription regulator activity	IEP	Enrichment
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Enrichment
BP	GO:1901264	carbohydrate derivative transport	IEP	Enrichment
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment
BP	GO:1901575	organic substance catabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR000843	HTH_LacI	1	45

External Links

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AAL22744 (STM3886, rbsR)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation