Aliases : STM3886, rbsR
Description : transcriptional repressor for rbs operon (GalR/LacI family) [Ensembl]. Bacterial regulatory proteins, Periplasmic binding protein-like domain [Interproscan].
Gene families : OG_02_0000021 (OrthoFinder) Phylogenetic Tree(s): OG0000021_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAL22744 | |
Cluster | HCCA: Cluster_30 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AAC75212 | galS, b2151 | galactose-and fucose-inducible galactose regulon... | 0.07 | OrthoFinder | |
AAC76776 | rbsR, b3753 | transcriptional repressor of ribose metabolism... | 0.13 | OrthoFinder | |
AAC76916 | cytR, b3934 | Anti-activator for CytR-CRP nucleoside utilization... | 0.08 | OrthoFinder | |
AAL00724 | spr1922, malR | Maltose operon transcriptional repressor [Ensembl].... | 0.02 | OrthoFinder | |
AAL21095 | STM2191, galS | GalR/LacI family transcriptional repressor of mgl operon... | 0.04 | OrthoFinder | |
AGT22061 | N559_0239 | putative transcriptional regulator [Ensembl].... | 0.03 | OrthoFinder | |
AGT22772 | N559_0986 | putative transcriptional regulator [Ensembl].... | 0.06 | OrthoFinder | |
AGT22777 | N559_0991, GalR | DNA-binding transcriptional regulator GalR [Ensembl].... | 0.07 | OrthoFinder | |
AGT22953 | N559_1185 | ascBF operon repressor [Ensembl]. Periplasmic binding... | 0.04 | OrthoFinder | |
AGT25335 | N559_3695 | putative periplasmic binding protein/LacI... | 0.05 | OrthoFinder | |
AGT25422 | N559_3786 | transcriptional regulator, LacI family [Ensembl].... | 0.03 | OrthoFinder | |
AGT26627 | N559_5050, CytR | DNA-binding transcriptional regulator CytR [Ensembl].... | 0.04 | OrthoFinder | |
AGT26654 | N559_5077 | repressor of galETK operon [Ensembl]. Periplasmic... | 0.04 | OrthoFinder | |
AGT26694 | N559_5120 | ribose operon repressor [Ensembl]. Periplasmic binding... | 0.11 | OrthoFinder | |
AKI48007 | L2625_00032 | transcriptional regulator, LacI family [Ensembl].... | 0.04 | OrthoFinder | |
AKI48222 | L2625_00274 | transcriptional regulator [Ensembl]. LacI-type HTH... | 0.03 | OrthoFinder | |
AKI48687 | L2625_00756 | LacI family transcription regulator [Ensembl]. LacI-type... | 0.04 | OrthoFinder | |
CCG27166 | No alias | Catabolite control protein A [Ensembl]. Bacterial... | 0.03 | OrthoFinder | |
CPC79767 | malR, ERS093114_01340 | Maltose operon transcriptional repressor MalR%2C LacI... | 0.04 | OrthoFinder | |
CRN86478 | rbsR | Ribose operon repressor [Ensembl]. Bacterial regulatory... | 0.04 | OrthoFinder | |
EDJ91402 | CGSHi22421_04843 | HTH-type transcriptional regulator GalR [Ensembl].... | 0.03 | OrthoFinder | |
EDJ91486 | CGSHi22421_06942 | hypothetical protein [Ensembl]. Bacterial regulatory... | 0.03 | OrthoFinder | |
KNA60659 | VCV51_032098 | lacI family Bacterial regulatory protein [Ensembl].... | 0.03 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEA | Interproscan |
BP | GO:0006355 | regulation of transcription, DNA-templated | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003700 | DNA-binding transcription factor activity | IEP | Enrichment |
MF | GO:0004340 | glucokinase activity | IEP | Enrichment |
MF | GO:0004396 | hexokinase activity | IEP | Enrichment |
MF | GO:0005337 | nucleoside transmembrane transporter activity | IEP | Enrichment |
MF | GO:0005536 | glucose binding | IEP | Enrichment |
BP | GO:0006753 | nucleoside phosphate metabolic process | IEP | Enrichment |
BP | GO:0006793 | phosphorus metabolic process | IEP | Enrichment |
BP | GO:0006796 | phosphate-containing compound metabolic process | IEP | Enrichment |
BP | GO:0009056 | catabolic process | IEP | Enrichment |
BP | GO:0009117 | nucleotide metabolic process | IEP | Enrichment |
BP | GO:0009166 | nucleotide catabolic process | IEP | Enrichment |
BP | GO:0015858 | nucleoside transport | IEP | Enrichment |
BP | GO:0015931 | nucleobase-containing compound transport | IEP | Enrichment |
MF | GO:0015932 | nucleobase-containing compound transmembrane transporter activity | IEP | Enrichment |
MF | GO:0019200 | carbohydrate kinase activity | IEP | Enrichment |
BP | GO:0019637 | organophosphate metabolic process | IEP | Enrichment |
MF | GO:0030246 | carbohydrate binding | IEP | Enrichment |
MF | GO:0048029 | monosaccharide binding | IEP | Enrichment |
BP | GO:0051156 | glucose 6-phosphate metabolic process | IEP | Enrichment |
MF | GO:0140110 | transcription regulator activity | IEP | Enrichment |
BP | GO:1901135 | carbohydrate derivative metabolic process | IEP | Enrichment |
BP | GO:1901264 | carbohydrate derivative transport | IEP | Enrichment |
BP | GO:1901292 | nucleoside phosphate catabolic process | IEP | Enrichment |
MF | GO:1901505 | carbohydrate derivative transmembrane transporter activity | IEP | Enrichment |
BP | GO:1901575 | organic substance catabolic process | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR000843 | HTH_LacI | 1 | 45 |
No external refs found! |