CPC39899 (potD, ERS093114_00322)

Aliases : potD, ERS093114_00322

Description : ABC transporter%2C periplasmic spermidine putrescine-binding protein potD [Ensembl]. Bacterial extracellular solute-binding protein [Interproscan].

Gene families : OG_02_0000121 (OrthoFinder) Phylogenetic Tree(s): OG0000121_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: CPC39899
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAL00047 spr1243, potD ABC transporter substrate-binding... 0.03 OrthoFinder
AAL19813 STM0877, potF ABC superfamily (peri_perm), putrescine transporter... 0.03 OrthoFinder
ADK86781 MPNE_0067 conserved hypothetical protein [Ensembl]. Hypothetical... 0.04 OrthoFinder
AEA94708 potD, OG1RF_12021 spermidine/putrescine ABC superfamily ATP binding... 0.12 OrthoFinder
AKI48760 potD, L2625_00831 spermidine/putrescine ABC transporter, substrate-binding... 0.1 OrthoFinder
CCL17171 potD, BN171_1330032 ABC-type transport system,spermidine/putrescine... 0.05 OrthoFinder
CRN99282 potF_2 Putrescine-binding periplasmic protein precursor... 0.03 OrthoFinder
CRO12353 potF_3 Putrescine-binding periplasmic protein precursor... 0.1 OrthoFinder
CRO92378 potF_5 Putrescine-binding periplasmic protein precursor... 0.02 OrthoFinder
KNA57821 VCV51_032790 bacterial extracellular solute-binding protein... 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0006351 transcription, DNA-templated IEP Enrichment
MF GO:0016779 nucleotidyltransferase activity IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0032774 RNA biosynthetic process IEP Enrichment
MF GO:0034062 5'-3' RNA polymerase activity IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0097659 nucleic acid-templated transcription IEP Enrichment
MF GO:0097747 RNA polymerase activity IEP Enrichment
InterPro domains Description Start Stop
IPR006059 SBP 49 321
No external refs found!