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  5. CPC39929

CPC39929 (ydcV, ERS093114_00323)


Aliases : ydcV, ERS093114_00323

Description : PotC [Ensembl]. Binding-protein-dependent transport system inner membrane component [Interproscan].


Gene families : OG_02_0000276 (OrthoFinder) Phylogenetic Tree(s): OG0000276_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CPC39929
Cluster HCCA: Cluster_5

Target Alias Description ECC score Gene Family Method Actions
AAC73944 potI, b0857 putrescine ABC transporter permease [Ensembl].... 0.04 OrthoFinder
AAC74208 potC, b1124 spermidine/putrescine ABC transporter permease... 0.05 OrthoFinder
AAL00048 spr1244, potC ABC transporter membrane-spanning... 0.03 OrthoFinder
AAL19816 STM0880, potI putrescine transporter [Ensembl].... 0.03 OrthoFinder
AEA94709 potC, OG1RF_12022 spermidine/putrescine ABC superfamily ATP binding... 0.03 OrthoFinder
AGT24825 N559_3165 spermidine/putrescine ABC transporter membrane protein... 0.04 OrthoFinder
AKI48759 potC, L2625_00830 spermidine/putrescine ABC transporter, permease protein... 0.04 OrthoFinder
CCG27581 No alias Spermidine Putrescine ABC transporter permease component... 0.03 OrthoFinder
CRO12320 ydcV_1 Inner membrane ABC transporter permease protein YdcV... 0.06 OrthoFinder
CRO92466 ydcV_3 Inner membrane ABC transporter permease protein YdcV... 0.04 OrthoFinder
CRO93042 ydcV_4 Inner membrane ABC transporter permease protein YdcV... 0.05 OrthoFinder
KNA57822 VCV51_032791 binding-protein-dependent transport system inner... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0016020 membrane IEA Interproscan
BP GO:0055085 transmembrane transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006364 rRNA processing IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006399 tRNA metabolic process IEP Enrichment
BP GO:0006400 tRNA modification IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009119 ribonucleoside metabolic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
MF GO:0009982 pseudouridine synthase activity IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
BP GO:0016072 rRNA metabolic process IEP Enrichment
MF GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors IEP Enrichment
MF GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor IEP Enrichment
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Enrichment
MF GO:0016657 oxidoreductase activity, acting on NAD(P)H, nitrogenous group as acceptor IEP Enrichment
MF GO:0016763 pentosyltransferase activity IEP Enrichment
BP GO:0017004 cytochrome complex assembly IEP Enrichment
MF GO:0020037 heme binding IEP Enrichment
MF GO:0033739 preQ1 synthase activity IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034622 cellular protein-containing complex assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0043933 protein-containing complex subunit organization IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0046906 tetrapyrrole binding IEP Enrichment
BP GO:0065003 protein-containing complex assembly IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 77 261
No external refs found!