Aliases : spr0813, ABC-MSD
Description : ABC transporter membrane-spanning permease-unknown substrate [Ensembl]. FtsX-like permease family [Interproscan].
Gene families : OG_02_0000663 (OrthoFinder) Phylogenetic Tree(s): OG0000663_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: AAK99617 | |
Cluster | HCCA: Cluster_2 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AEA94343 | OG1RF_11656 | ABC superfamily ATP binding cassette transporter,... | 0.01 | OrthoFinder | |
AEA94800 | OG1RF_12113 | ABC superfamily ATP binding cassette transporter,... | 0.01 | OrthoFinder | |
AKI49740 | L2625_01882 | ABC transporter, permease protein [Ensembl]. ABC... | 0.01 | OrthoFinder | |
AKI50113 | L2625_02271 | ABC transporter, permease protein [Ensembl]. ABC... | 0.03 | OrthoFinder | |
CCL17735 | BN171_1740010 | ABC-type transport system, permease [Ensembl]. FtsX-like... | 0.01 | OrthoFinder | |
CCL17742 | BN171_1750003 | ABC-type transport system, permease protein [Ensembl].... | 0.01 | OrthoFinder | |
CCL19417 | BN171_3110010 | ABC-type transport system, permease [Ensembl]. FtsX-like... | 0.04 | OrthoFinder | |
CCL19489 | BN171_3180013 | ABC-type transport system, permease [Ensembl]. | 0.02 | OrthoFinder | |
CCL19641 | BN171_3340008 | Abc transporter, permease associated with salivaricin... | 0.01 | OrthoFinder | |
CCL20546 | BN171_650001 | ABC-type transport system, permease [Ensembl]. FtsX-like... | 0.03 | OrthoFinder | |
CPC66060 | ERS093114_00988 | ABC transporter permease protein [Ensembl]. FtsX-like... | 0.01 | OrthoFinder | |
CPC69061 | ERS093114_01068 | ABC transporter permease [Ensembl]. FtsX-like permease... | 0.05 | OrthoFinder |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEP | Enrichment |
BP | GO:0002097 | tRNA wobble base modification | IEP | Enrichment |
BP | GO:0002100 | tRNA wobble adenosine to inosine editing | IEP | Enrichment |
MF | GO:0005488 | binding | IEP | Enrichment |
MF | GO:0005515 | protein binding | IEP | Enrichment |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Enrichment |
BP | GO:0006382 | adenosine to inosine editing | IEP | Enrichment |
BP | GO:0006396 | RNA processing | IEP | Enrichment |
BP | GO:0006399 | tRNA metabolic process | IEP | Enrichment |
BP | GO:0006400 | tRNA modification | IEP | Enrichment |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Enrichment |
BP | GO:0006807 | nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0008033 | tRNA processing | IEP | Enrichment |
BP | GO:0009451 | RNA modification | IEP | Enrichment |
MF | GO:0009982 | pseudouridine synthase activity | IEP | Enrichment |
BP | GO:0016070 | RNA metabolic process | IEP | Enrichment |
BP | GO:0016553 | base conversion or substitution editing | IEP | Enrichment |
MF | GO:0016853 | isomerase activity | IEP | Enrichment |
MF | GO:0016866 | intramolecular transferase activity | IEP | Enrichment |
MF | GO:0031072 | heat shock protein binding | IEP | Enrichment |
BP | GO:0034470 | ncRNA processing | IEP | Enrichment |
BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Enrichment |
BP | GO:0043170 | macromolecule metabolic process | IEP | Enrichment |
BP | GO:0043412 | macromolecule modification | IEP | Enrichment |
BP | GO:0046483 | heterocycle metabolic process | IEP | Enrichment |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Enrichment |
MF | GO:0097159 | organic cyclic compound binding | IEP | Enrichment |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Enrichment |
MF | GO:1901363 | heterocyclic compound binding | IEP | Enrichment |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR003838 | ABC3_permease_dom | 87 | 181 |
No external refs found! |