CCL19667 (BN171_3370001)

Aliases : BN171_3370001

Description : Transcriptional regulator, AraC family [Ensembl]. Integron-associated effector binding protein, Helix-turn-helix domain [Interproscan].

Gene families : OG_02_0000017 (OrthoFinder) Phylogenetic Tree(s): OG0000017_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCL19667
Cluster	HCCA: Cluster_12

Target	Alias	Description	ECC score	Gene Family Method
AAC76703	yidL, b3680	AraC family putative transcriptional regulator...	0.02	OrthoFinder
AAL19317	STM0363	putative transcription regulator, AraC family [Ensembl]....	0.03	OrthoFinder
AAL23401	STM4586, rob	transcriptional regulator [Ensembl]. Helix-turn-helix...	0.03	OrthoFinder
AEA94354	OG1RF_11667	AraC family transcriptional regulator [Ensembl]....	0.05	OrthoFinder
AKI48081	L2625_00107	transcriptional regulator, AraC family [Ensembl]....	0.04	OrthoFinder
CRO70395	pchR_1	Regulatory protein PchR [Ensembl]. Helix-turn-helix...	0.02	OrthoFinder
KNA58949	VCV51_031249	AraC family Bacterial regulatory helix-turn-helix...	0.03	OrthoFinder
KNA60578	VCV51_032249	AraC family Bacterial regulatory helix-turn-helix...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003747	translation release factor activity	IEP	Enrichment
MF	GO:0004066	asparagine synthase (glutamine-hydrolyzing) activity	IEP	Enrichment
MF	GO:0004347	glucose-6-phosphate isomerase activity	IEP	Enrichment
MF	GO:0005507	copper ion binding	IEP	Enrichment
BP	GO:0006364	rRNA processing	IEP	Enrichment
BP	GO:0006415	translational termination	IEP	Enrichment
MF	GO:0008079	translation termination factor activity	IEP	Enrichment
MF	GO:0008233	peptidase activity	IEP	Enrichment
MF	GO:0008762	UDP-N-acetylmuramate dehydrogenase activity	IEP	Enrichment
CC	GO:0016020	membrane	IEP	Enrichment
BP	GO:0016072	rRNA metabolic process	IEP	Enrichment
BP	GO:0017038	protein import	IEP	Enrichment
BP	GO:0022411	cellular component disassembly	IEP	Enrichment
BP	GO:0032984	protein-containing complex disassembly	IEP	Enrichment
BP	GO:0043624	cellular protein complex disassembly	IEP	Enrichment
BP	GO:0043933	protein-containing complex subunit organization	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR029441	Cass2	156	288
IPR018060	HTH_AraC	30	107

External Links

UniProtKB	U3X074

CCL19667 (BN171_3370001)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation