CCG26517

Description : LSU ribosomal protein L20p [Ensembl]. Ribosomal protein L20 [Interproscan].

Gene families : OG_02_0000432 (OrthoFinder) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCG26517
Cluster	HCAA: Cluster_4

Target	Alias	Description	ECC score	Gene Family Method
AAC74786	rplT, b1716	50S ribosomal subunit protein L20 [Ensembl]. Ribosomal...	0.1	OrthoFinder
AAK99667	spr0863, rplT	50S Ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.07	OrthoFinder
AAL20261	STM1336, rplT	50S ribosomal subunit protein L20 [Ensembl]. Ribosomal...	0.17	OrthoFinder
ADK87005	rplT, MPNE_0135	ribosomal protein L20 [Ensembl]. Ribosomal protein L20...	0.09	OrthoFinder
AEA93330	rplT, OG1RF_10643	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.14	OrthoFinder
AHY39505	rplT, CJ8421_01210	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.08	OrthoFinder
AKI49777	rplT, L2625_01922	ribosomal protein L20 [Ensembl]. Ribosomal protein L20...	0.1	OrthoFinder
AKP15673	rplT, WX61_01636	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.04	OrthoFinder
CCP44408	rplT, Rv1643	50S ribosomal protein L20 RplT [Ensembl]. Ribosomal...	0.09	OrthoFinder
CPC85832	rplT, ERS093114_01500	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.18	OrthoFinder
CRO66872	rplT	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.14	OrthoFinder
EDJ91135	CGSHi22421_10352	50S ribosomal protein L20 [Ensembl]. Ribosomal protein...	0.04	OrthoFinder
KNA52216	VCV51_033474	ribosomal protein L20 [Ensembl]. Ribosomal protein L20...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003723	RNA binding	IEP	Enrichment
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Enrichment
BP	GO:0007154	cell communication	IEP	Enrichment
BP	GO:0007267	cell-cell signaling	IEP	Enrichment
BP	GO:0009372	quorum sensing	IEP	Enrichment
BP	GO:0009451	RNA modification	IEP	Enrichment
BP	GO:0009595	detection of biotic stimulus	IEP	Enrichment
BP	GO:0009607	response to biotic stimulus	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016853	isomerase activity	IEP	Enrichment
MF	GO:0016866	intramolecular transferase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0023052	signaling	IEP	Enrichment
BP	GO:0032784	regulation of DNA-templated transcription, elongation	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0044764	multi-organism cellular process	IEP	Enrichment
BP	GO:0046483	heterocycle metabolic process	IEP	Enrichment
MF	GO:0051536	iron-sulfur cluster binding	IEP	Enrichment
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEP	Enrichment
MF	GO:0051540	metal cluster binding	IEP	Enrichment
BP	GO:0051606	detection of stimulus	IEP	Enrichment
BP	GO:0051704	multi-organism process	IEP	Enrichment
BP	GO:0060245	detection of cell density	IEP	Enrichment
BP	GO:0090304	nucleic acid metabolic process	IEP	Enrichment
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005813	Ribosomal_L20	3	109

External Links

No external refs found!

CCG26517

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation