CCG26517


Description : LSU ribosomal protein L20p [Ensembl]. Ribosomal protein L20 [Interproscan].


Gene families : OG_02_0000432 (OrthoFinder) Phylogenetic Tree(s): OG0000432_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG26517
Cluster HCAA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC74786 rplT, b1716 50S ribosomal subunit protein L20 [Ensembl]. Ribosomal... 0.1 OrthoFinder
AAK99667 spr0863, rplT 50S Ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.07 OrthoFinder
AAL20261 STM1336, rplT 50S ribosomal subunit protein L20 [Ensembl]. Ribosomal... 0.17 OrthoFinder
ADK87005 rplT, MPNE_0135 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.09 OrthoFinder
AEA93330 rplT, OG1RF_10643 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
AHY39505 rplT, CJ8421_01210 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder
AKI49777 rplT, L2625_01922 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.1 OrthoFinder
AKP15673 rplT, WX61_01636 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.04 OrthoFinder
CCP44408 rplT, Rv1643 50S ribosomal protein L20 RplT [Ensembl]. Ribosomal... 0.09 OrthoFinder
CPC85832 rplT, ERS093114_01500 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
CRO66872 rplT 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.14 OrthoFinder
EDJ91135 CGSHi22421_10352 50S ribosomal protein L20 [Ensembl]. Ribosomal protein... 0.04 OrthoFinder
KNA52216 VCV51_033474 ribosomal protein L20 [Ensembl]. Ribosomal protein L20... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
BP GO:0006139 nucleobase-containing compound metabolic process IEP Enrichment
BP GO:0006396 RNA processing IEP Enrichment
BP GO:0006725 cellular aromatic compound metabolic process IEP Enrichment
BP GO:0007154 cell communication IEP Enrichment
BP GO:0007267 cell-cell signaling IEP Enrichment
BP GO:0009372 quorum sensing IEP Enrichment
BP GO:0009451 RNA modification IEP Enrichment
BP GO:0009595 detection of biotic stimulus IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016853 isomerase activity IEP Enrichment
MF GO:0016866 intramolecular transferase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0023052 signaling IEP Enrichment
BP GO:0032784 regulation of DNA-templated transcription, elongation IEP Enrichment
BP GO:0034470 ncRNA processing IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0044764 multi-organism cellular process IEP Enrichment
BP GO:0046483 heterocycle metabolic process IEP Enrichment
MF GO:0051536 iron-sulfur cluster binding IEP Enrichment
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP Enrichment
MF GO:0051540 metal cluster binding IEP Enrichment
BP GO:0051606 detection of stimulus IEP Enrichment
BP GO:0051704 multi-organism process IEP Enrichment
BP GO:0060245 detection of cell density IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:1901360 organic cyclic compound metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR005813 Ribosomal_L20 3 109
No external refs found!