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  5. CCG27156

CCG27156


Description : 3'-to-5' exoribonuclease RNase R [Ensembl]. RNB domain, Cold shock domain, S1 RNA binding domain, Ribonuclease B OB domain [Interproscan].


Gene families : OG_02_0000589 (OrthoFinder) Phylogenetic Tree(s): OG0000589_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CCG27156
Cluster HCAA: Cluster_14

Target Alias Description ECC score Gene Family Method Actions
EDJ91637 CGSHi22421_07778 23S rRNA (guanosine-2'-O-)-methyltransferase [Ensembl].... 0.04 OrthoFinder
KNA54969 VCV51_033153 ribonuclease R [Ensembl]. RNB domain, Cold shock domain,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003896 DNA primase activity IEP Enrichment
MF GO:0005337 nucleoside transmembrane transporter activity IEP Enrichment
CC GO:0005575 cellular_component IEP Enrichment
BP GO:0006865 amino acid transport IEP Enrichment
MF GO:0015234 thiamine transmembrane transporter activity IEP Enrichment
MF GO:0015658 branched-chain amino acid transmembrane transporter activity IEP Enrichment
BP GO:0015803 branched-chain amino acid transport IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
BP GO:0015849 organic acid transport IEP Enrichment
MF GO:0015932 nucleobase-containing compound transmembrane transporter activity IEP Enrichment
CC GO:0016020 membrane IEP Enrichment
MF GO:0016603 glutaminyl-peptide cyclotransferase activity IEP Enrichment
MF GO:0016755 aminoacyltransferase activity IEP Enrichment
MF GO:0034257 nicotinamide riboside transmembrane transporter activity IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
CC GO:0110165 cellular anatomical entity IEP Enrichment
MF GO:1901474 azole transmembrane transporter activity IEP Enrichment
MF GO:1901505 carbohydrate derivative transmembrane transporter activity IEP Enrichment
InterPro domains Description Start Stop
IPR040476 CSD2 151 225
IPR003029 S1_domain 622 700
IPR001900 RNase_II/R 247 573
IPR013223 RNase_B_OB_dom 67 124
No external refs found!