CCG27403

Description : SSU ribosomal protein S13p (S18e) [Ensembl]. Ribosomal protein S13/S18 [Interproscan].

Gene families : OG_02_0000825 (OrthoFinder) Phylogenetic Tree(s): OG0000825_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCG27403
Cluster	HCAA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
AAK99017	spr0213, rpsM	30S Ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.07	OrthoFinder
ADK86745	rpsM, MPNE_0218	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.05	OrthoFinder
AEA92862	rpsM, OG1RF_10175	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.08	OrthoFinder
AHY40765	rpsM, CJ8421_07965	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.07	OrthoFinder
AKI50543	rpsM, L2625_02753	ribosomal protein S13 [Ensembl]. Ribosomal protein S13...	0.06	OrthoFinder
AKP15144	rpsM, WX61_01090	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.05	OrthoFinder
CBI65740	rpsM, HPB8_183	small subunit ribosomal protein S13 [Ensembl]. Ribosomal...	0.04	OrthoFinder
CCL20588	rpsM, BN171_70028	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.05	OrthoFinder
CCP46282	rpsM, Rv3460c	30S ribosomal protein S13 RpsM [Ensembl]. Ribosomal...	0.05	OrthoFinder
CPD14335	rpsM, ERS093114_02146	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.1	OrthoFinder
CRO74398	rpsM	30S ribosomal protein S13 [Ensembl]. Ribosomal protein...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0005515	protein binding	IEP	Enrichment
MF	GO:0016779	nucleotidyltransferase activity	IEP	Enrichment
MF	GO:0034062	5'-3' RNA polymerase activity	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
MF	GO:0097747	RNA polymerase activity	IEP	Enrichment
MF	GO:0140098	catalytic activity, acting on RNA	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	62	108

External Links

No external refs found!