CCG27619

Description : Ribosomal small subunit pseudouridine synthase A [Ensembl]. S4 domain, RNA pseudouridylate synthase [Interproscan].

Gene families : OG_02_0000058 (OrthoFinder) Phylogenetic Tree(s): OG0000058_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CCG27619
Cluster	HCAA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAC74351	rluB, b1269	23S rRNA pseudouridine(2605) synthase [Ensembl]. S4...	0.04	OrthoFinder
AAL20637	STM1719, yciL	putative ribosomal large subunit pseudouridine synthase...	0.05	OrthoFinder
AGT24675	N559_3012	23S rRNA pseudouridylate synthase B [Ensembl]. S4 domain...	0.03	OrthoFinder
AKP14134	rluB, WX61_00045	Ribosomal large subunit pseudouridine synthase B...	0.03	OrthoFinder
CCL18388	rluB, BN171_2280004	Ribosomal large subunit pseudouridine synthase B...	0.03	OrthoFinder
EDJ90671	CGSHi22421_04158	predicted methyltransferase [Ensembl]. S4 domain, RNA...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	IEA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003735	structural constituent of ribosome	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
MF	GO:0005337	nucleoside transmembrane transporter activity	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
MF	GO:0008887	glycerate kinase activity	IEP	Enrichment
MF	GO:0015932	nucleobase-containing compound transmembrane transporter activity	IEP	Enrichment
BP	GO:0031388	organic acid phosphorylation	IEP	Enrichment
MF	GO:0034257	nicotinamide riboside transmembrane transporter activity	IEP	Enrichment
CC	GO:0043226	organelle	IEP	Enrichment
CC	GO:0043228	non-membrane-bounded organelle	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
MF	GO:1901505	carbohydrate derivative transmembrane transporter activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR002942	S4_RNA-bd	1	38
IPR006145	PsdUridine_synth_RsuA/RluA	62	197

External Links

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