CRN70888 (gltC_1)


Aliases : gltC_1

Description : HTH-type transcriptional regulator GltC [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000002 (OrthoFinder) Phylogenetic Tree(s): OG0000002_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRN70888
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AAC75590 hcaR, b2537 hca operon transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AAL20406 STM1487, ynfL putative LysR family transcriptional regulator... 0.02 OrthoFinder
AAL21318 STM2424, yfeR putative LysR family transcriptional regulator... 0.04 OrthoFinder
AGT23255 N559_1502 putative LysR-family transcriptional regulator... 0.02 OrthoFinder
AGT23946 N559_2239 LysR family transcriptional regulator [Ensembl]. LysR... 0.03 OrthoFinder
AGT24322 N559_2646, LysR transcriptional regulator LysR [Ensembl]. LysR substrate... 0.03 OrthoFinder
CCG27021 No alias Transcriptional regulators, LysR family [Ensembl]. LysR... 0.02 OrthoFinder
CCP45064 Rv2282c Probable transcription regulator (LysR family)... 0.02 OrthoFinder
CRO80200 cynR_3 Cyn operon transcriptional activator [Ensembl]. LysR... 0.06 OrthoFinder
CRP33083 benM_7 Ben and cat operon transcriptional regulator [Ensembl].... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0004016 adenylate cyclase activity IEP Enrichment
BP GO:0006163 purine nucleotide metabolic process IEP Enrichment
BP GO:0006164 purine nucleotide biosynthetic process IEP Enrichment
BP GO:0006171 cAMP biosynthetic process IEP Enrichment
BP GO:0006753 nucleoside phosphate metabolic process IEP Enrichment
BP GO:0009117 nucleotide metabolic process IEP Enrichment
BP GO:0009150 purine ribonucleotide metabolic process IEP Enrichment
BP GO:0009152 purine ribonucleotide biosynthetic process IEP Enrichment
BP GO:0009165 nucleotide biosynthetic process IEP Enrichment
BP GO:0009187 cyclic nucleotide metabolic process IEP Enrichment
BP GO:0009190 cyclic nucleotide biosynthetic process IEP Enrichment
BP GO:0009259 ribonucleotide metabolic process IEP Enrichment
BP GO:0009260 ribonucleotide biosynthetic process IEP Enrichment
MF GO:0009975 cyclase activity IEP Enrichment
MF GO:0016849 phosphorus-oxygen lyase activity IEP Enrichment
BP GO:0019693 ribose phosphate metabolic process IEP Enrichment
MF GO:0043565 sequence-specific DNA binding IEP Enrichment
BP GO:0046058 cAMP metabolic process IEP Enrichment
BP GO:0046390 ribose phosphate biosynthetic process IEP Enrichment
BP GO:0052652 cyclic purine nucleotide metabolic process IEP Enrichment
BP GO:0072521 purine-containing compound metabolic process IEP Enrichment
BP GO:0072522 purine-containing compound biosynthetic process IEP Enrichment
BP GO:0090407 organophosphate biosynthetic process IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1901293 nucleoside phosphate biosynthetic process IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 6 64
IPR005119 LysR_subst-bd 91 293