CRN86190 (dmlR_3)

Aliases : dmlR_3

Description : D-malate degradation protein R [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRN86190
Cluster	HCCA: Cluster_9

Target	Alias	Description	ECC score	Gene Family Method
AAC74410	pgrR, b1328	murein peptide degradation regulator [Ensembl]. LysR...	0.07	OrthoFinder
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.04	OrthoFinder
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
AGT22561	N559_0770	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT22904	N559_1134	putative LysR-family transcriptional regulator...	0.02	OrthoFinder
AGT24568	N559_2901	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT24894	N559_3234	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT26014	N559_4407	putative HTH-type transcriptional regulator [Ensembl]....	0.04	OrthoFinder
CRO13028	dmlR_8	D-malate degradation protein R [Ensembl]. LysR substrate...	0.07	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.07	OrthoFinder
CRO43057	dmlR_15	D-malate degradation protein R [Ensembl]. LysR substrate...	0.05	OrthoFinder
EDJ90238	CGSHi22421_05102	lysR-family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
KNA55708	VCV51_031016	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA59858	VCV51_032269	LysR substrate binding domain-containing protein...	0.02	OrthoFinder
KNA59923	VCV51_032334	LysR substrate binding domain-containing protein...	0.03	OrthoFinder
KNA60706	VCV51_032145	LysR substrate binding domain-containing protein...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0010181	FMN binding	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	90	295
IPR000847	Tscrpt_reg_HTH_LysR	5	64

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_00828

CRN86190 (dmlR_3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation