CRO33942 (dmlR_9)


Aliases : dmlR_9

Description : D-malate degradation protein R [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].


Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRO33942
Cluster HCCA: Cluster_42

Target Alias Description ECC score Gene Family Method Actions
AGT24266 N559_2588 LysR substrate binding domain protein [Ensembl]. LysR... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Enrichment
BP GO:0002376 immune system process IEP Enrichment
MF GO:0003677 DNA binding IEP Enrichment
MF GO:0003978 UDP-glucose 4-epimerase activity IEP Enrichment
MF GO:0004518 nuclease activity IEP Enrichment
MF GO:0004519 endonuclease activity IEP Enrichment
MF GO:0004520 endodeoxyribonuclease activity IEP Enrichment
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
BP GO:0005976 polysaccharide metabolic process IEP Enrichment
BP GO:0006259 DNA metabolic process IEP Enrichment
BP GO:0006304 DNA modification IEP Enrichment
BP GO:0006310 DNA recombination IEP Enrichment
BP GO:0006885 regulation of pH IEP Enrichment
BP GO:0006952 defense response IEP Enrichment
BP GO:0006955 immune response IEP Enrichment
BP GO:0008653 lipopolysaccharide metabolic process IEP Enrichment
MF GO:0009036 type II site-specific deoxyribonuclease activity IEP Enrichment
BP GO:0009103 lipopolysaccharide biosynthetic process IEP Enrichment
BP GO:0009307 DNA restriction-modification system IEP Enrichment
BP GO:0009607 response to biotic stimulus IEP Enrichment
BP GO:0015074 DNA integration IEP Enrichment
MF GO:0015109 chromate transmembrane transporter activity IEP Enrichment
MF GO:0015666 restriction endodeoxyribonuclease activity IEP Enrichment
BP GO:0015703 chromate transport IEP Enrichment
BP GO:0016051 carbohydrate biosynthetic process IEP Enrichment
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Enrichment
MF GO:0016888 endodeoxyribonuclease activity, producing 5'-phosphomonoesters IEP Enrichment
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Enrichment
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Enrichment
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Enrichment
BP GO:0043207 response to external biotic stimulus IEP Enrichment
BP GO:0043412 macromolecule modification IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044262 cellular carbohydrate metabolic process IEP Enrichment
BP GO:0044264 cellular polysaccharide metabolic process IEP Enrichment
BP GO:0044355 clearance of foreign intracellular DNA IEP Enrichment
BP GO:0051707 response to other organism IEP Enrichment
BP GO:0055067 monovalent inorganic cation homeostasis IEP Enrichment
BP GO:0090304 nucleic acid metabolic process IEP Enrichment
BP GO:0098542 defense response to other organism IEP Enrichment
BP GO:0099046 clearance of foreign intracellular nucleic acids IEP Enrichment
BP GO:1901137 carbohydrate derivative biosynthetic process IEP Enrichment
BP GO:1903509 liposaccharide metabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR000847 Tscrpt_reg_HTH_LysR 6 64
IPR005119 LysR_subst-bd 89 292