CRO44534 (ydeO)


Aliases : ydeO

Description : HTH-type transcriptional regulator YdeO [Ensembl]. Cupin, Helix-turn-helix domain [Interproscan].


Gene families : OG_02_0001397 (OrthoFinder) Phylogenetic Tree(s): OG0001397_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRO44534
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AGT21941 N559_0115 putative AraC-type regulatory protein [Ensembl].... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
MF GO:0043565 sequence-specific DNA binding IEA Interproscan
Type GO Term Name Evidence Source
CC GO:0043190 ATP-binding cassette (ABC) transporter complex IEP Enrichment
CC GO:0098533 ATPase dependent transmembrane transport complex IEP Enrichment
CC GO:0098796 membrane protein complex IEP Enrichment
CC GO:0098797 plasma membrane protein complex IEP Enrichment
CC GO:1902495 transmembrane transporter complex IEP Enrichment
CC GO:1904949 ATPase complex IEP Enrichment
CC GO:1990351 transporter complex IEP Enrichment
InterPro domains Description Start Stop
IPR018060 HTH_AraC 221 298
IPR032783 AraC_lig 11 182