CRO96044 (yjiR_2)

Aliases : yjiR_2

Description : putative HTH-type transcriptional regulator YjiR [Ensembl]. Bacterial regulatory proteins, Aminotransferase class I and II [Interproscan].

Gene families : OG_02_0000163 (OrthoFinder) Phylogenetic Tree(s): OG0000163_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRO96044

Target	Alias	Description	ECC score	Gene Family Method
AAL00054	spr1250	Conserved hypothetical protein [Ensembl]. Bacterial...	0.02	OrthoFinder
AGT22557	N559_0766	putative aminotransferase [Ensembl].	0.01	OrthoFinder
AGT22995	N559_1231	putative GntR family regulatory protein [Ensembl]. gntR...	0.03	OrthoFinder
AGT24059	N559_2360	transcriptional regulator [Ensembl]. gntR family [InterProScan].	0.02	OrthoFinder
CCL19817	BN171_3520003	Transcriptional regulator, GntR family [Ensembl]....	0.01	OrthoFinder
CRO34462	gabR_1	HTH-type transcriptional regulatory protein GabR...	0.04	OrthoFinder
CRP05205	gabR_3	HTH-type transcriptional regulatory protein GabR...	0.01	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
MF	GO:0019842	vitamin binding	None	Extended
MF	GO:0030170	pyridoxal phosphate binding	IEA	Interproscan
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
MF	GO:0070279	vitamin B6 binding	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Enrichment
MF	GO:0003677	DNA binding	IEP	Enrichment
MF	GO:0043565	sequence-specific DNA binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR004839	Aminotransferase_I/II	105	461
IPR000524	Tscrpt_reg_HTH_GntR	3	66

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_03960

CRO96044 (yjiR_2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation