CRP22590 (dmlR_24)

Aliases : dmlR_24

Description : D-malate degradation protein R [Ensembl]. LysR substrate binding domain, Bacterial regulatory helix-turn-helix protein [Interproscan].

Gene families : OG_02_0000007 (OrthoFinder) Phylogenetic Tree(s): OG0000007_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CRP22590
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAC74410	pgrR, b1328	murein peptide degradation regulator [Ensembl]. LysR...	0.02	OrthoFinder
AAL20594	STM1677	putative LysR family transcriptional regulator...	0.04	OrthoFinder
AAL22236	STM3367, yhcS	putative LysR family transcriptional regulator...	0.03	OrthoFinder
AGT22104	N559_0282	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT22322	N559_0518	putative DNA-binding transcriptional regulator...	0.04	OrthoFinder
AGT22561	N559_0770	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT22904	N559_1134	putative LysR-family transcriptional regulator...	0.03	OrthoFinder
AGT23444	N559_1702	LysR family transcriptional regulator [Ensembl]. LysR...	0.03	OrthoFinder
AGT23535	N559_1799	LysR substrate binding domain protein [Ensembl]. LysR...	0.03	OrthoFinder
AGT24140	N559_2447	LysR family transcriptional regulator [Ensembl]. LysR...	0.02	OrthoFinder
AGT24245	N559_2564	LysR family transcriptional regulator [Ensembl]. LysR...	0.04	OrthoFinder
AGT26014	N559_4407	putative HTH-type transcriptional regulator [Ensembl]....	0.03	OrthoFinder
CRO00805	dmlR_5	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO13028	dmlR_8	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO42652	dmlR_14	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRO60046	dmlR_16	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO69698	dmlR_18	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder
CRO75806	dmlR_19	D-malate degradation protein R [Ensembl]. LysR substrate...	0.02	OrthoFinder
CRP16170	dmlR_23	D-malate degradation protein R [Ensembl]. LysR substrate...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000030	mannosyltransferase activity	IEP	Enrichment
MF	GO:0000287	magnesium ion binding	IEP	Enrichment
MF	GO:0003824	catalytic activity	IEP	Enrichment
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Enrichment
MF	GO:0004764	shikimate 3-dehydrogenase (NADP+) activity	IEP	Enrichment
MF	GO:0005215	transporter activity	IEP	Enrichment
BP	GO:0006486	protein glycosylation	IEP	Enrichment
BP	GO:0006493	protein O-linked glycosylation	IEP	Enrichment
BP	GO:0006810	transport	IEP	Enrichment
MF	GO:0008234	cysteine-type peptidase activity	IEP	Enrichment
BP	GO:0009292	genetic transfer	IEP	Enrichment
BP	GO:0009294	DNA mediated transformation	IEP	Enrichment
MF	GO:0015204	urea transmembrane transporter activity	IEP	Enrichment
BP	GO:0015840	urea transport	IEP	Enrichment
BP	GO:0016485	protein processing	IEP	Enrichment
MF	GO:0016491	oxidoreductase activity	IEP	Enrichment
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Enrichment
BP	GO:0019755	one-carbon compound transport	IEP	Enrichment
MF	GO:0019842	vitamin binding	IEP	Enrichment
MF	GO:0022857	transmembrane transporter activity	IEP	Enrichment
MF	GO:0030976	thiamine pyrophosphate binding	IEP	Enrichment
BP	GO:0042886	amide transport	IEP	Enrichment
MF	GO:0042887	amide transmembrane transporter activity	IEP	Enrichment
BP	GO:0043413	macromolecule glycosylation	IEP	Enrichment
BP	GO:0044764	multi-organism cellular process	IEP	Enrichment
BP	GO:0051179	localization	IEP	Enrichment
BP	GO:0051234	establishment of localization	IEP	Enrichment
BP	GO:0051604	protein maturation	IEP	Enrichment
BP	GO:0051704	multi-organism process	IEP	Enrichment
BP	GO:0055085	transmembrane transport	IEP	Enrichment
BP	GO:0055114	obsolete oxidation-reduction process	IEP	Enrichment
BP	GO:0070085	glycosylation	IEP	Enrichment
BP	GO:0071586	CAAX-box protein processing	IEP	Enrichment
BP	GO:0071918	urea transmembrane transport	IEP	Enrichment
MF	GO:1901681	sulfur compound binding	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR005119	LysR_subst-bd	92	301
IPR000847	Tscrpt_reg_HTH_LysR	9	65

External Links

Locus_tag	PAERUG_E11_London_26_VIM_2_06_13_04776

CRP22590 (dmlR_24)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation