CRP40256 (fliA)


Aliases : fliA

Description : Sigma-F factor [Ensembl]. Sigma-70 region 2, Sigma-70 region 3 [Interproscan].


Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CRP40256
Cluster HCCA: Cluster_48

Target Alias Description ECC score Gene Family Method Actions
AAC74989 fliA, b1922 RNA polymerase, sigma 28 (sigma F) factor [Ensembl].... 0.06 OrthoFinder
AAL20868 STM1956, fliA sigma F (sigma 28) factor of RNA polymerase [Ensembl].... 0.08 OrthoFinder
AHY39335 fliA, CJ8421_00320 flagellar biosynthesis sigma factor [Ensembl]. Sigma-70... 0.04 OrthoFinder
CCL18272 fliA, BN171_220024 RNA polymerase sigma-28factor for flagellar operon... 0.04 OrthoFinder
KNA59620 VCV51_031384 FliA/WhiG family RNA polymerase sigma factor [Ensembl].... 0.07 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000105 histidine biosynthetic process IEP Enrichment
BP GO:0001539 cilium or flagellum-dependent cell motility IEP Enrichment
MF GO:0003774 motor activity IEP Enrichment
MF GO:0004040 amidase activity IEP Enrichment
MF GO:0004635 phosphoribosyl-AMP cyclohydrolase activity IEP Enrichment
BP GO:0006547 histidine metabolic process IEP Enrichment
BP GO:0006928 movement of cell or subcellular component IEP Enrichment
BP GO:0006935 chemotaxis IEP Enrichment
CC GO:0009288 bacterial-type flagellum IEP Enrichment
CC GO:0009425 bacterial-type flagellum basal body IEP Enrichment
CC GO:0009427 bacterial-type flagellum basal body, distal rod, L ring IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016787 hydrolase activity IEP Enrichment
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Enrichment
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
MF GO:0019238 cyclohydrolase activity IEP Enrichment
BP GO:0022402 cell cycle process IEP Enrichment
BP GO:0032101 regulation of response to external stimulus IEP Enrichment
BP GO:0032506 cytokinetic process IEP Enrichment
BP GO:0040011 locomotion IEP Enrichment
BP GO:0040012 regulation of locomotion IEP Enrichment
BP GO:0042330 taxis IEP Enrichment
BP GO:0048583 regulation of response to stimulus IEP Enrichment
BP GO:0048870 cell motility IEP Enrichment
BP GO:0050920 regulation of chemotaxis IEP Enrichment
BP GO:0071973 bacterial-type flagellum-dependent cell motility IEP Enrichment
BP GO:0090529 cell septum assembly IEP Enrichment
BP GO:0097588 archaeal or bacterial-type flagellum-dependent cell motility IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 14 86
IPR007624 RNA_pol_sigma70_r3 95 155
IPR007630 RNA_pol_sigma70_r4 182 231