AHY39335 (fliA, CJ8421_00320)

Aliases : fliA, CJ8421_00320

Description : flagellar biosynthesis sigma factor [Ensembl]. Sigma-70 region 2 [Interproscan].

Gene families : OG_02_0000698 (OrthoFinder) Phylogenetic Tree(s): OG0000698_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: AHY39335
Cluster HCCA: Cluster_9

Target Alias Description ECC score Gene Family Method Actions
AAC74989 fliA, b1922 RNA polymerase, sigma 28 (sigma F) factor [Ensembl].... 0.06 OrthoFinder
AAL20868 STM1956, fliA sigma F (sigma 28) factor of RNA polymerase [Ensembl].... 0.06 OrthoFinder
CCL18272 fliA, BN171_220024 RNA polymerase sigma-28factor for flagellar operon... 0.05 OrthoFinder
CRP40256 fliA Sigma-F factor [Ensembl]. Sigma-70 region 2, Sigma-70... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006352 DNA-templated transcription, initiation IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003774 motor activity IEP Enrichment
MF GO:0005515 protein binding IEP Enrichment
MF GO:0008134 transcription factor binding IEP Enrichment
MF GO:0016462 pyrophosphatase activity IEP Enrichment
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Enrichment
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Enrichment
MF GO:0017111 nucleoside-triphosphatase activity IEP Enrichment
InterPro domains Description Start Stop
IPR007627 RNA_pol_sigma70_r2 20 89
IPR007630 RNA_pol_sigma70_r4 178 227
No external refs found!