KNA49090 (VCV51_033819)

Aliases : VCV51_033819

Description : ribosomal protein S12 [Ensembl]. Ribosomal protein S12/S23 [Interproscan].

Gene families : OG_02_0000684 (OrthoFinder) Phylogenetic Tree(s): OG0000684_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA49090
Cluster	HCCA: Cluster_24

Target	Alias	Description	ECC score	Gene Family Method
AAC76367	rpsL, b3342	30S ribosomal subunit protein S12 [Ensembl]. Ribosomal...	0.24	OrthoFinder
AAK99052	spr0248, rpsL	30S Ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.18	OrthoFinder
AAL22311	STM3448, rpsL	30S ribosomal subunit protein S12 [Ensembl]. Ribosomal...	0.28	OrthoFinder
ADK87065	rpsL, MPNE_0257	ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.05	OrthoFinder
AEA92831	rpsL, OG1RF_10144	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.2	OrthoFinder
AKI50591	rpsL, L2625_02801	ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.08	OrthoFinder
AKP15118	rpsL, WX61_01064	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.09	OrthoFinder
CCG26288	No alias	SSU ribosomal protein S12p (S23e) [Ensembl]. Ribosomal...	0.1	OrthoFinder
CCL20678	rpsL, BN171_90004	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.15	OrthoFinder
CCP43425	rpsL, Rv0682	30S ribosomal protein S12 RpsL [Ensembl]. Ribosomal...	0.08	OrthoFinder
CPC57151	rpsL, ERS093114_00833	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.16	OrthoFinder
CRO73605	rpsL	30S ribosomal protein S12 [Ensembl]. Ribosomal protein...	0.16	OrthoFinder
EDJ90052	CGSHi22421_05925	tRNA uridine 5-carboxymethylaminomethyl modification...	0.17	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003723	RNA binding	IEP	Enrichment
MF	GO:0003735	structural constituent of ribosome	IEP	Enrichment
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Enrichment
MF	GO:0003855	3-dehydroquinate dehydratase activity	IEP	Enrichment
MF	GO:0005198	structural molecule activity	IEP	Enrichment
CC	GO:0005840	ribosome	IEP	Enrichment
BP	GO:0006414	translational elongation	IEP	Enrichment
MF	GO:0008097	5S rRNA binding	IEP	Enrichment
MF	GO:0008176	tRNA (guanine-N7-)-methyltransferase activity	IEP	Enrichment
BP	GO:0008616	queuosine biosynthetic process	IEP	Enrichment
BP	GO:0009163	nucleoside biosynthetic process	IEP	Enrichment
BP	GO:0016070	RNA metabolic process	IEP	Enrichment
MF	GO:0016423	tRNA (guanine) methyltransferase activity	IEP	Enrichment
MF	GO:0016859	cis-trans isomerase activity	IEP	Enrichment
MF	GO:0019843	rRNA binding	IEP	Enrichment
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	Enrichment
BP	GO:0031554	regulation of DNA-templated transcription, termination	IEP	Enrichment
BP	GO:0034404	nucleobase-containing small molecule biosynthetic process	IEP	Enrichment
BP	GO:0034660	ncRNA metabolic process	IEP	Enrichment
BP	GO:0042254	ribosome biogenesis	IEP	Enrichment
BP	GO:0042455	ribonucleoside biosynthetic process	IEP	Enrichment
BP	GO:0043094	cellular metabolic compound salvage	IEP	Enrichment
BP	GO:0043174	nucleoside salvage	IEP	Enrichment
CC	GO:0043229	intracellular organelle	IEP	Enrichment
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	Enrichment
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	Enrichment
BP	GO:0044085	cellular component biogenesis	IEP	Enrichment
BP	GO:0046116	queuosine metabolic process	IEP	Enrichment
MF	GO:0046983	protein dimerization activity	IEP	Enrichment
BP	GO:0051128	regulation of cellular component organization	IEP	Enrichment
BP	GO:1901659	glycosyl compound biosynthetic process	IEP	Enrichment
BP	GO:1990397	queuosine salvage	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR006032	Ribosomal_S12/S23	12	123

External Links

No external refs found!

KNA49090 (VCV51_033819)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation