KNA49090 (VCV51_033819)


Aliases : VCV51_033819

Description : ribosomal protein S12 [Ensembl]. Ribosomal protein S12/S23 [Interproscan].


Gene families : OG_02_0000684 (OrthoFinder) Phylogenetic Tree(s): OG0000684_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA49090
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC76367 rpsL, b3342 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.24 OrthoFinder
AAK99052 spr0248, rpsL 30S Ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.18 OrthoFinder
AAL22311 STM3448, rpsL 30S ribosomal subunit protein S12 [Ensembl]. Ribosomal... 0.28 OrthoFinder
ADK87065 rpsL, MPNE_0257 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.05 OrthoFinder
AEA92831 rpsL, OG1RF_10144 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.2 OrthoFinder
AKI50591 rpsL, L2625_02801 ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.08 OrthoFinder
AKP15118 rpsL, WX61_01064 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.09 OrthoFinder
CCG26288 No alias SSU ribosomal protein S12p (S23e) [Ensembl]. Ribosomal... 0.1 OrthoFinder
CCL20678 rpsL, BN171_90004 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.15 OrthoFinder
CCP43425 rpsL, Rv0682 30S ribosomal protein S12 RpsL [Ensembl]. Ribosomal... 0.08 OrthoFinder
CPC57151 rpsL, ERS093114_00833 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder
CRO73605 rpsL 30S ribosomal protein S12 [Ensembl]. Ribosomal protein... 0.16 OrthoFinder
EDJ90052 CGSHi22421_05925 tRNA uridine 5-carboxymethylaminomethyl modification... 0.17 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0006412 translation IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003735 structural constituent of ribosome IEP Enrichment
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
MF GO:0005198 structural molecule activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0008616 queuosine biosynthetic process IEP Enrichment
BP GO:0009163 nucleoside biosynthetic process IEP Enrichment
BP GO:0016070 RNA metabolic process IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016859 cis-trans isomerase activity IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Enrichment
BP GO:0031554 regulation of DNA-templated transcription, termination IEP Enrichment
BP GO:0034404 nucleobase-containing small molecule biosynthetic process IEP Enrichment
BP GO:0034660 ncRNA metabolic process IEP Enrichment
BP GO:0042254 ribosome biogenesis IEP Enrichment
BP GO:0042455 ribonucleoside biosynthetic process IEP Enrichment
BP GO:0043094 cellular metabolic compound salvage IEP Enrichment
BP GO:0043174 nucleoside salvage IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043244 regulation of protein-containing complex disassembly IEP Enrichment
BP GO:0044085 cellular component biogenesis IEP Enrichment
BP GO:0046116 queuosine metabolic process IEP Enrichment
MF GO:0046983 protein dimerization activity IEP Enrichment
BP GO:0051128 regulation of cellular component organization IEP Enrichment
BP GO:1901659 glycosyl compound biosynthetic process IEP Enrichment
BP GO:1990397 queuosine salvage IEP Enrichment
InterPro domains Description Start Stop
IPR006032 Ribosomal_S12/S23 12 123
No external refs found!