KNA51127 (VCV51_033628, RpoE)

Aliases : VCV51_033628, RpoE

Description : RNA polymerase sigma factor RpoE [Ensembl]. Sigma-70 region 2 [Interproscan].

Gene families : OG_02_0000184 (OrthoFinder) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA51127
Cluster	HCCA: Cluster_35

Target	Alias	Description	ECC score	Gene Family Method
AAC75626	rpoE, b2573	RNA polymerase sigma E factor [Ensembl]. Sigma-70 region...	0.04	OrthoFinder
AAL21534	STM2640, rpoE	sigma E (sigma 24) factor of RNA polymerase [Ensembl]....	0.04	OrthoFinder
AGT23117	N559_1355, RpoE	RNA polymerase sigma factor RpoE [Ensembl].	0.05	OrthoFinder
EDJ89961	CGSHi22421_05772	RNA polymerase sigma-70 factor [Ensembl]. Sigma-70...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016987	sigma factor activity	IEA	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Enrichment
MF	GO:0003714	transcription corepressor activity	IEP	Enrichment
MF	GO:0003725	double-stranded RNA binding	IEP	Enrichment
BP	GO:0006352	DNA-templated transcription, initiation	IEP	Enrichment
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Enrichment
BP	GO:0015969	guanosine tetraphosphate metabolic process	IEP	Enrichment
MF	GO:0016989	sigma factor antagonist activity	IEP	Enrichment
BP	GO:0019216	regulation of lipid metabolic process	IEP	Enrichment
BP	GO:0019217	regulation of fatty acid metabolic process	IEP	Enrichment
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0034035	purine ribonucleoside bisphosphate metabolic process	IEP	Enrichment
BP	GO:0042157	lipoprotein metabolic process	IEP	Enrichment
BP	GO:0042158	lipoprotein biosynthetic process	IEP	Enrichment
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR013249	RNA_pol_sigma70_r4_t2	134	181
IPR007627	RNA_pol_sigma70_r2	25	92

External Links

No external refs found!