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Heatmap: Cluster_35 (HCCA)

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View using InCHLib : here ( Experimental feature, still under development)

(Values are log2 transformed ratios of a genes expression in a sample divided by the mean expression level)

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Gene
0.02% arabinose,A1552
0.5mM indole,N16961
37C,C6706
arabinose-,A1552
E-exponential,5uM AI-2,C6706
E-exponential,5uM CAI-1,C6706
E-exponential,5uM DPO,C6706
E-exponential,Water,C6706
empty Tn
E-stationary,0.2% L-arabinose,C6706
LB(2% NaCl),30C,N16961
LB,C7258
Log,0.2% L-arabinose,C6706
Methanol,N16961
O395
Polymyxin,C6706
Polymyxin,VC1639
riboflavin-,N16961
riboflavin+,N16961
TnqstR
TntfoY
TntoX-strep
Water,Rich,N16961
KNA47890 (VCV51_033872)
 -0.19 -0.66 -1.89 -0.3 0.37 0.43 0.54 0.14 -0.18 0.51 -0.75 0.73 0.06 -0.63 -1.22 -0.47 0.0 0.53 0.57 -0.33 -0.46 -0.37 0.66
KNA50361 (VCV51_031434)
 -0.44 -0.68 -1.62 -1.06 0.46 0.37 0.47 0.56 -0.37 0.16 -0.51 -0.23 -0.08 -0.8 -0.88 0.7 0.53 0.72 0.95 -0.31 -0.18 -0.28 -0.67
KNA51127 (RpoE)
 -0.95 -0.7 -2.44 -1.27 -1.99 -2.11 -1.85 -2.05 0.91 -1.61 -0.29 0.06 -0.46 -0.65 -1.76 1.19 0.56 1.57 1.31 0.83 0.53 0.46 -0.46
KNA51129 (VCV51_031660)
 -0.51 -0.38 -1.94 -0.64 -1.55 -1.48 -1.3 -1.53 0.71 -1.11 -0.25 0.68 -0.13 -0.35 -0.95 1.3 0.68 0.8 0.82 0.53 0.24 0.31 -0.02
KNA51130 (VCV51_033630)
 -1.03 -1.35 -1.06 -1.12 -0.89 -0.89 -0.77 -0.87 -0.45 -0.72 -0.45 0.87 0.23 -1.16 -0.6 2.07 1.15 0.66 0.63 -0.5 -0.88 -0.79 0.49
KNA51165 (VCV51_031672)
 -0.4 -2.2 -1.86 -0.94 0.99 1.03 1.15 0.95 -0.32 0.23 -0.59 -0.09 0.5 -2.41 -2.29 0.37 -0.5 0.55 0.49 -0.61 -0.64 -0.21 -0.66
KNA53013 (VCV51_033367)
 -0.25 -0.7 -1.67 -0.47 0.33 0.34 0.5 0.34 0.05 0.21 -0.47 0.43 -0.12 -0.72 -0.93 0.27 0.18 0.62 0.71 -0.2 -0.58 -0.59 0.37
KNA53582 (VCV51_030059)
 -0.32 -0.92 -1.05 -0.46 0.36 0.52 0.55 0.15 0.05 0.21 -0.1 0.21 0.23 -0.69 -0.91 0.06 0.31 0.27 0.46 -0.19 -0.38 -0.13 0.2
KNA53931 (VCV51_030854)
 0.3 -1.54 -1.6 -0.11 -0.78 -0.94 -1.01 -0.95 0.84 -0.99 -1.54 -0.62 -0.5 -1.54 -2.45 1.08 1.16 0.8 0.73 0.52 0.64 0.72 0.17
KNA54634 (VCV51_033210)
 -1.0 0.06 -2.18 -1.45 -0.17 -0.02 -0.09 -0.04 0.62 -0.72 -0.18 -0.18 -0.43 0.36 -1.15 0.49 0.32 1.1 0.96 0.06 0.05 0.06 -0.3
KNA54654 (VCV51_033222)
 -0.34 -0.17 -0.95 -0.79 -1.18 -1.59 -1.38 -1.61 0.93 -1.21 -1.09 -0.93 -1.35 0.09 -1.25 1.1 1.02 0.47 0.45 0.63 0.53 0.66 1.02
KNA54687 (VCV51_030772)
 0.17 -2.81 -2.45 -0.81 0.87 0.87 0.96 0.62 -0.1 -0.84 -1.46 -0.7 0.28 -2.75 -2.4 0.74 0.37 0.65 0.84 -0.21 -0.4 -0.11 -0.08
KNA54688 (VCV51_030773)
 0.47 -2.62 -1.76 -0.27 0.95 0.74 0.98 0.76 -0.1 -0.59 -1.4 0.1 -0.08 -2.62 -2.07 0.03 -0.17 0.59 0.57 -0.0 -0.23 0.07 -0.2
KNA54689 (VCV51_030774)
 0.36 -2.65 -1.88 -0.41 0.94 0.48 0.85 0.62 0.36 -1.33 -1.26 0.02 -0.59 -2.54 -1.81 0.02 -0.36 0.68 0.71 0.49 0.25 0.42 -0.56
KNA54791 (VCV51_033205)
 -0.13 -0.25 -1.49 -0.56 -0.54 -0.4 -0.3 -0.69 0.35 -0.05 -0.86 0.44 -0.2 -0.44 -1.16 0.63 0.43 0.49 0.45 0.31 0.33 0.44 0.68
KNA55092 (VCV51_031843)
 -0.51 -0.23 -0.85 -0.88 0.53 0.55 0.59 0.29 -0.54 0.42 0.06 1.08 -0.01 0.11 -0.2 -0.98 -0.58 -0.21 0.02 -0.42 -0.3 -0.36 0.25
KNA55220 (VCV51_033052)
 -0.82 -1.02 -2.99 -1.25 0.14 0.21 0.27 0.03 0.51 -0.53 -1.21 -0.4 -0.43 -0.82 -1.56 1.09 0.96 0.68 0.72 0.51 0.05 0.25 -0.02
KNA55221 (VCV51_033053)
 0.06 -1.64 -1.23 -0.41 -0.01 -0.03 -0.04 -0.12 0.21 -0.13 -0.27 -0.4 -0.16 -1.2 -1.34 0.74 0.71 0.85 0.97 0.22 0.06 0.35 -0.58
KNA55685 (VCV51_030999)
 -0.06 -0.69 -1.2 -0.49 0.33 0.19 0.21 0.35 0.11 -0.72 -1.15 -0.38 -0.54 -0.62 -0.58 0.78 0.67 0.54 0.66 0.11 -0.07 0.04 0.19
KNA55994 (VCV51_030912)
 -0.08 -1.23 -1.36 -1.49 0.3 0.31 0.35 0.43 0.29 -0.47 -0.76 0.41 -0.43 -1.38 -0.14 0.27 0.04 0.24 0.27 0.26 0.4 0.72 0.14
KNA56001 (VCV51_030920)
 0.08 -1.84 -2.54 -0.38 -0.29 -0.35 -0.29 -0.36 0.58 -0.62 -0.68 -0.54 0.04 -2.18 -1.73 0.97 0.93 0.65 0.76 0.28 0.43 0.66 0.32
KNA56007 (VCV51_030924)
 -0.42 -1.78 -0.91 -0.82 1.25 1.07 1.01 1.21 -0.45 0.09 -0.61 -0.21 0.34 -1.73 -2.76 -0.77 -1.03 -0.41 -0.2 -0.74 -0.62 -0.53 1.25
KNA56008 (VCV51_030925)
 -0.09 -1.93 -0.5 -0.06 0.65 0.52 0.56 0.55 -0.07 0.17 -0.78 -0.11 0.19 -1.87 -2.05 0.39 0.05 0.18 0.32 -0.27 -0.3 -0.12 0.73
KNA56154 (VCV51_030894)
 -0.14 -0.65 -0.71 -0.62 -0.05 0.08 -0.04 -0.15 -0.45 -0.35 -0.5 0.19 -0.63 -0.66 -0.3 0.96 0.76 0.75 0.77 -0.39 -0.33 -0.43 0.6
KNA56155 (VCV51_032991)
 -0.29 0.22 -2.04 -1.07 -0.14 -0.04 -0.09 -0.36 0.07 -0.33 -0.36 0.21 -0.69 0.15 -0.75 1.02 0.84 0.16 0.38 0.37 0.44 0.35 -1.24
KNA56171 (VCV51_030907)
 -0.83 -1.96 -0.54 -1.31 -0.91 -0.57 -0.6 -0.96 -0.29 0.03 -1.28 0.05 0.65 -1.94 -1.46 1.23 1.05 1.33 1.41 0.15 -0.23 -0.46 -0.07
KNA56282 (VCV51_030600)
 -0.89 0.37 -1.98 -1.36 -0.16 -0.04 0.07 -0.14 -0.39 0.24 -0.08 0.6 0.27 0.42 0.23 0.47 0.31 0.56 0.44 -0.52 -0.78 -0.39 0.08
KNA56289 (VCV51_030607)
 -0.34 -0.35 -2.15 -1.36 -0.67 -0.49 -0.47 -0.69 0.23 -0.17 -0.37 1.15 -0.2 -0.35 0.58 0.5 0.22 0.28 0.44 0.08 0.01 0.49 0.38
KNA56411 (VCV51_032966)
 -0.41 -0.76 -2.28 -1.09 -0.54 0.24 -0.52 -1.13 -0.2 1.08 0.97 0.78 -0.8 -0.7 -1.12 0.27 -0.04 0.53 0.75 -0.37 -0.38 -0.04 0.86
KNA56412 (VCV51_030683)
 -0.76 -0.25 -3.11 -1.53 -0.61 0.23 -0.56 -1.14 -0.18 0.79 1.22 0.77 -0.78 -0.28 -0.82 0.21 -0.13 0.5 0.69 -0.51 -0.53 -0.06 1.06
KNA56417 (VCV51_032967)
 -0.23 -2.05 -1.04 -0.89 0.1 0.06 0.14 -0.01 0.29 -0.08 -0.26 0.72 -0.02 -1.8 0.21 0.28 0.1 0.67 0.86 0.02 -0.0 0.1 -0.32
KNA56876 (VCV51_030511)
 -0.11 -0.68 -1.05 -0.44 0.19 0.16 0.19 0.03 0.47 -0.4 0.04 -0.89 -0.3 -0.69 -0.64 0.45 0.5 0.17 0.33 0.54 -0.05 0.3 0.27
KNA56925 (VCV51_032876)
 0.35 -1.06 -1.02 -0.14 -0.15 -0.38 -0.24 -0.59 0.07 -0.27 -0.87 0.33 0.09 -1.03 -0.47 0.66 0.52 0.85 0.98 0.15 -0.1 0.0 -0.19
KNA56927 (RadC)
 0.7 -2.53 -1.16 0.25 -1.82 -1.19 -1.24 -1.82 1.09 -0.79 -1.58 -0.04 -1.37 -2.31 -1.04 1.13 0.6 0.19 0.3 0.76 0.82 0.78 0.85
KNA57123 (VCV51_032855)
 -0.27 -0.61 -2.13 -1.06 0.52 0.2 -0.13 0.39 0.86 -0.5 0.14 -1.82 -0.39 -0.32 -0.72 -1.1 -0.9 0.53 0.74 0.76 0.95 0.87 -1.47
KNA57442 (VCV51_030441)
 -1.13 -1.64 -2.38 -1.5 0.72 0.72 0.75 0.9 0.6 -1.02 -0.16 -0.74 -0.53 -1.67 -1.34 -0.1 -0.2 0.81 0.88 0.23 0.05 0.23 0.21
KNA57476 (VCV51_030460)
 -1.07 -0.11 -2.9 -1.91 0.7 0.71 0.74 0.73 0.28 -0.95 0.13 -0.5 -0.94 -0.21 -0.4 0.3 0.3 0.17 0.33 -0.13 0.0 0.17 0.06
KNA58529 (VCV51_031169)
 -0.85 -1.13 -2.57 -1.17 -3.88 -3.97 -3.8 -4.0 0.84 -0.21 -1.22 -0.63 -2.83 -1.09 -3.18 1.59 1.19 1.78 1.79 0.43 0.14 0.35 -0.38
KNA58596 (VCV51_031114)
 -0.4 -0.94 -1.32 -1.22 -0.07 -0.0 -0.05 -0.19 -0.29 0.2 0.92 0.72 0.05 -1.05 -1.23 0.53 0.28 0.74 0.96 -0.38 -0.7 -0.08 0.06
KNA59417 (DsbB)
 -1.81 -0.58 -1.95 -2.17 0.13 0.27 0.41 0.17 -0.82 0.34 -0.04 0.38 0.57 -0.41 -1.43 0.6 0.29 1.11 0.96 -0.91 -0.75 -0.82 0.65
KNA59419 (FadR)
 -0.33 0.03 -1.88 -0.8 -0.88 -0.68 -0.61 -0.86 0.74 -0.89 -0.29 -0.09 -0.55 -0.0 -0.64 0.92 0.74 0.31 0.25 0.62 0.58 0.62 0.13
KNA59647 (VCV51_031369)
 -0.59 -0.22 -1.51 -1.31 0.37 0.18 0.21 0.23 -0.09 -0.5 -0.6 -0.01 -0.24 -0.23 0.19 0.64 0.42 0.74 0.76 -0.33 -0.26 -0.25 0.14
KNA59860 (VCV51_032271)
 -0.18 -2.84 -0.25 -0.48 1.24 1.06 1.08 1.18 -0.58 0.74 -1.52 0.43 0.36 -3.03 -1.92 -0.62 -0.06 -0.38 -0.24 -0.7 -0.85 -0.44 -0.42
KNA59881 (VCV51_032292)
 -0.92 -0.82 -1.7 -1.23 0.3 0.65 0.71 0.24 -1.18 0.59 -0.39 0.22 0.49 -0.85 0.66 -1.83 -1.57 0.73 0.65 -1.4 -1.51 -1.48 1.68
KNA59898 (VCV51_032309)
 -0.38 -0.33 -1.01 -0.15 0.24 0.88 0.75 0.81 -0.01 0.41 -1.5 0.28 -0.1 -0.42 -0.51 -0.91 -0.12 -0.15 -0.21 -0.08 -0.36 -0.19 0.57
KNA59946 (VCV51_032358)
 -0.26 -0.72 -0.73 -0.66 1.01 0.87 0.8 0.77 -0.41 0.17 -0.66 0.5 -0.7 -0.9 -0.28 -0.51 -0.13 -0.41 -0.33 -0.66 -0.69 -0.5 1.01
KNA59949 (VCV51_032361)
 -1.02 0.42 -2.2 -1.3 1.17 0.89 0.98 1.0 0.1 -0.46 -1.91 -0.68 0.05 0.54 -1.63 -0.65 -0.16 -0.34 -0.23 -0.54 -0.71 -0.09 0.63
KNA60006 (VCV51_032418)
 -1.14 -1.94 -1.04 -1.71 1.5 1.13 1.19 1.44 -0.7 -0.67 -1.5 -0.44 -0.8 -2.13 -2.53 -0.84 -0.4 -0.63 -0.68 -0.96 -0.9 -0.75 1.98
KNA60604 (VCV51_032193)
 -0.14 -2.04 0.39 -0.46 1.18 0.98 1.15 1.07 -0.62 0.36 -0.05 -0.2 -0.05 -2.12 -0.55 -2.46 -1.99 -0.83 -0.47 -0.48 -0.36 -0.09 0.56
KNA60769 (VCV51_032031)
 0.01 -1.77 -0.6 -0.49 0.69 0.68 0.67 0.6 -0.31 -0.17 -0.11 -0.34 -0.22 -1.88 0.05 -2.1 -1.37 0.35 0.56 -0.38 -0.45 -0.34 1.47
KNA60971 (VCV51_031946)
 0.56 -3.82 -0.98 1.12 0.22 0.79 0.48 0.92 0.14 0.76 -2.97 -0.13 -0.63 -4.05 -2.89 -1.35 -0.35 0.75 0.58 -0.2 -0.56 -0.16 0.14
KNA60972 (VCV51_031947)
 0.86 -4.05 -1.73 1.2 0.53 0.62 0.55 0.75 0.57 0.65 -2.69 -0.09 -1.14 -3.92 -4.59 -1.54 -0.63 0.87 0.73 0.29 -0.17 0.12 -6.39

Details

Dark gray cells indicate values where the raw expression is zero (cannot be log-transformed). Blue cells indicate samples where the expression of the gene is below average and red cells indicate the gene is expressed above average in the sample. White cells are average.