1. Home
  2. Species
  3. Vibrio cholerae
  4. Sequence
  5. KNA51872

KNA51872 (VCV51_030402)


Aliases : VCV51_030402

Description : binding-protein-dependent transport system inner membrane component [Ensembl]. Binding-protein-dependent transport system inner membrane component [Interproscan].


Gene families : OG_02_0000034 (OrthoFinder) Phylogenetic Tree(s): OG0000034_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA51872
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AAC73918 gsiC, b0831 glutathione ABC transporter permease [Ensembl].... 0.08 OrthoFinder
AAC74326 oppB, b1244 oligopeptide ABC transporter permease [Ensembl].... 0.05 OrthoFinder
AAC74375 sapB, b1293 antimicrobial peptide transport ABC transporter permease... 0.14 OrthoFinder
AAC76502 nikB, b3477 nickel ABC transporter permease [Ensembl].... 0.03 OrthoFinder
AAC76568 dppB, b3543 dipeptide/heme ABC transporter permease [Ensembl].... 0.07 OrthoFinder
AAL19786 STM0850, yliC putative ABC transporter periplasmic binding protein... 0.03 OrthoFinder
AAL20182 STM1256 putative ABC transporter [Ensembl].... 0.05 OrthoFinder
AAL20610 STM1693, sapB ABC superfamily peptide transport protein [Ensembl].... 0.06 OrthoFinder
AAL20663 STM1745, oppB oligopeptide transport protein [Ensembl].... 0.03 OrthoFinder
AAL22490 STM3629, dppB dipeptide transport protein 1 [Ensembl].... 0.03 OrthoFinder
AEA93323 opp1B, OG1RF_10636 oligopeptide ABC superfamily ATP binding cassette... 0.02 OrthoFinder
AEA95055 opp2B, OG1RF_12368 oligopeptide ABC superfamily ATP binding cassette... 0.06 OrthoFinder
AGT22074 N559_0252, DppB dipeptide transporter permease DppB [Ensembl].... 0.04 OrthoFinder
AGT22122 N559_0303, NikB nickel transporter permease NikB [Ensembl].... 0.03 OrthoFinder
AGT23464 N559_1722, DppB putative dipeptide ABC transporter, permease protein... 0.03 OrthoFinder
AGT23803 N559_2085 oligopeptide transporter permease [Ensembl].... 0.03 OrthoFinder
AGT24128 N559_2435 peptide ABC transporter membrane protein [Ensembl].... 0.04 OrthoFinder
AGT25118 N559_3467 peptide ABC transporter membrane protein [Ensembl].... 0.03 OrthoFinder
AGT25384 N559_3746 putative ABC transport system permease component... 0.04 OrthoFinder
AGT26720 N559_5146, GsiC putative glutathione ABC transporter, permease protein... 0.03 OrthoFinder
AKI48108 L2625_00135 oligopeptide ABC transporter, permease protein... 0.06 OrthoFinder
AKI50193 oppB, L2625_02359 oligopeptide ABC transporter, permease protein... 0.03 OrthoFinder
CBI66820 dppB, HPB8_1263 dipeptide ABC transporter, permease protein (DppB)... 0.07 OrthoFinder
CCG26341 OppB Oligopeptide transport system permease protein OppB (TC... 0.04 OrthoFinder
CCL17022 oppB, BN171_1090003 ABC-type transport system, oligopeptide-family permease... 0.03 OrthoFinder
CCL19135 appB, BN171_2880002 ABC-type transport system, oligopeptide-family permease... 0.03 OrthoFinder
CCP44039 oppB, Rv1283c Probable oligopeptide-transport integral membrane... 0.03 OrthoFinder
CPC32208 nikB, ERS093114_00035 nickel transport system permease protein [Ensembl].... 0.03 OrthoFinder
CPC43653 oppB_1, ERS093114_00435 Oligopeptide transport system permease protein oppB... 0.03 OrthoFinder
CPC43926 oppB_2, ERS093114_00443 peptide ABC transporter permease [Ensembl].... 0.06 OrthoFinder
CPC72096 opp-3B, ERS093114_01158 oligopeptide permease%2C channel-forming protein... 0.05 OrthoFinder
CPC95781 gsiC, ERS093114_01725 Oligopeptide transport system permease protein... 0.03 OrthoFinder
CPD17797 opp-1B, ERS093114_02217 Oligopeptide transporter putative membrane permease... 0.06 OrthoFinder
CRO32970 gsiC Glutathione transport system permease protein GsiC... 0.03 OrthoFinder
CRP12152 dppB Dipeptide transport system permease protein DppB... 0.09 OrthoFinder
EDJ90883 CGSHi22421_03503 peptide ABC transporter permease protein [Ensembl].... 0.03 OrthoFinder
EDJ91926 CGSHi22421_09223 oligopeptide permease ABC transporter membrane component... 0.08 OrthoFinder

Type GO Term Name Evidence Source
BP GO:0055085 transmembrane transport IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0005975 carbohydrate metabolic process IEP Enrichment
MF GO:0008081 phosphoric diester hydrolase activity IEP Enrichment
BP GO:0015833 peptide transport IEP Enrichment
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Enrichment
MF GO:0016868 intramolecular transferase activity, phosphotransferases IEP Enrichment
MF GO:0016887 ATPase IEP Enrichment
MF GO:0042578 phosphoric ester hydrolase activity IEP Enrichment
BP GO:0042886 amide transport IEP Enrichment
MF GO:0048029 monosaccharide binding IEP Enrichment
InterPro domains Description Start Stop
IPR000515 MetI-like 117 325
No external refs found!