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  5. KNA52491

KNA52491 (VCV51_030149)


Aliases : VCV51_030149

Description : ribosomal protein L28 [Ensembl]. Ribosomal L28 family [Interproscan].


Gene families : OG_02_0000360 (OrthoFinder) Phylogenetic Tree(s): OG0000360_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA52491
Cluster HCCA: Cluster_24

Target Alias Description ECC score Gene Family Method Actions
AAC76661 rpmB, b3637 50S ribosomal subunit protein L28 [Ensembl]. Ribosomal... 0.22 OrthoFinder
AAL22587 STM3728, rpmB 50S ribosomal subunit protein L28 [Ensembl]. Ribosomal... 0.24 OrthoFinder
AEA95067 rpmB2, OG1RF_12380 50S ribosomal protein L28 [Ensembl]. Ribosomal L28... 0.07 OrthoFinder
AGT21993 N559_0170 50S ribosomal protein L28 [Ensembl]. 0.06 OrthoFinder
AKI49811 rpmB, L2625_01958 ribosomal protein L28 [Ensembl]. Ribosomal protein... 0.03 OrthoFinder
CBI66233 rpmB, HPB8_676 50S ribosomal protein L28 [Ensembl]. Ribosomal L28... 0.02 OrthoFinder
CCL19022 rpmB, BN171_2800001 50S ribosomal protein L28 [Ensembl]. Ribosomal L28... 0.03 OrthoFinder
CRO28155 rpmB 50S ribosomal protein L28 [Ensembl]. Ribosomal L28... 0.13 OrthoFinder
EDJ91750 rpmG, CGSHi22421_08343 50S ribosomal protein L33 [Ensembl]. Ribosomal L28... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Enrichment
MF GO:0003678 DNA helicase activity IEP Enrichment
MF GO:0003723 RNA binding IEP Enrichment
MF GO:0003855 3-dehydroquinate dehydratase activity IEP Enrichment
CC GO:0005840 ribosome IEP Enrichment
BP GO:0006066 alcohol metabolic process IEP Enrichment
BP GO:0006412 translation IEP Enrichment
BP GO:0006414 translational elongation IEP Enrichment
BP GO:0006518 peptide metabolic process IEP Enrichment
BP GO:0006807 nitrogen compound metabolic process IEP Enrichment
MF GO:0008097 5S rRNA binding IEP Enrichment
BP GO:0008150 biological_process IEP Enrichment
BP GO:0008152 metabolic process IEP Enrichment
MF GO:0008168 methyltransferase activity IEP Enrichment
MF GO:0008173 RNA methyltransferase activity IEP Enrichment
MF GO:0008175 tRNA methyltransferase activity IEP Enrichment
MF GO:0008176 tRNA (guanine-N7-)-methyltransferase activity IEP Enrichment
BP GO:0009058 biosynthetic process IEP Enrichment
BP GO:0009059 macromolecule biosynthetic process IEP Enrichment
BP GO:0009987 cellular process IEP Enrichment
CC GO:0015934 large ribosomal subunit IEP Enrichment
BP GO:0016226 iron-sulfur cluster assembly IEP Enrichment
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Enrichment
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Enrichment
BP GO:0019538 protein metabolic process IEP Enrichment
BP GO:0019751 polyol metabolic process IEP Enrichment
MF GO:0019843 rRNA binding IEP Enrichment
BP GO:0031163 metallo-sulfur cluster assembly IEP Enrichment
BP GO:0034641 cellular nitrogen compound metabolic process IEP Enrichment
BP GO:0034645 cellular macromolecule biosynthetic process IEP Enrichment
BP GO:0043043 peptide biosynthetic process IEP Enrichment
MF GO:0043138 3'-5' DNA helicase activity IEP Enrichment
BP GO:0043170 macromolecule metabolic process IEP Enrichment
CC GO:0043228 non-membrane-bounded organelle IEP Enrichment
CC GO:0043229 intracellular organelle IEP Enrichment
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Enrichment
BP GO:0043603 cellular amide metabolic process IEP Enrichment
BP GO:0043604 amide biosynthetic process IEP Enrichment
BP GO:0043647 inositol phosphate metabolic process IEP Enrichment
BP GO:0044237 cellular metabolic process IEP Enrichment
BP GO:0044238 primary metabolic process IEP Enrichment
BP GO:0044249 cellular biosynthetic process IEP Enrichment
BP GO:0044260 cellular macromolecule metabolic process IEP Enrichment
BP GO:0044267 cellular protein metabolic process IEP Enrichment
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Enrichment
CC GO:0044391 ribosomal subunit IEP Enrichment
BP GO:0046164 alcohol catabolic process IEP Enrichment
BP GO:0046174 polyol catabolic process IEP Enrichment
BP GO:0046434 organophosphate catabolic process IEP Enrichment
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Enrichment
BP GO:0046855 inositol phosphate dephosphorylation IEP Enrichment
BP GO:0071545 inositol phosphate catabolic process IEP Enrichment
BP GO:0071704 organic substance metabolic process IEP Enrichment
MF GO:0140098 catalytic activity, acting on RNA IEP Enrichment
BP GO:1901564 organonitrogen compound metabolic process IEP Enrichment
BP GO:1901566 organonitrogen compound biosynthetic process IEP Enrichment
BP GO:1901576 organic substance biosynthetic process IEP Enrichment
BP GO:1901615 organic hydroxy compound metabolic process IEP Enrichment
BP GO:1901616 organic hydroxy compound catabolic process IEP Enrichment
CC GO:1990904 ribonucleoprotein complex IEP Enrichment
InterPro domains Description Start Stop
IPR026569 Ribo_L28/L24 3 62
No external refs found!