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  5. KNA53342

KNA53342 (VCV51_031633)


Aliases : VCV51_031633

Description : Type IV pilin assembly protein pilC [Ensembl]. Type II secretion system (T2SS) [Interproscan].


Gene families : OG_02_0000229 (OrthoFinder) Phylogenetic Tree(s): OG0000229_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: KNA53342
Cluster HCCA: Cluster_4

Target Alias Description ECC score Gene Family Method Actions
AAC73217 hofC, b0106 assembly protein in type IV pilin biogenesis,... 0.03 OrthoFinder
AAC76352 gspF, b3327 general secretory pathway component, cryptic [Ensembl].... 0.03 OrthoFinder
CCL19980 BN171_3610023 Putative type IV pilus secretion protein [Ensembl]. Type... 0.03 OrthoFinder
CRP12851 epsF_4 General secretion pathway protein F [Ensembl]. Type II... 0.03 OrthoFinder
EDJ90500 CGSHi22421_06367 putative type IV pilin secretion protein [Ensembl]. Type... 0.1 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0006022 aminoglycan metabolic process IEP Enrichment
BP GO:0006026 aminoglycan catabolic process IEP Enrichment
BP GO:0006030 chitin metabolic process IEP Enrichment
BP GO:0006032 chitin catabolic process IEP Enrichment
BP GO:0006040 amino sugar metabolic process IEP Enrichment
BP GO:0009056 catabolic process IEP Enrichment
BP GO:0009057 macromolecule catabolic process IEP Enrichment
BP GO:0016998 cell wall macromolecule catabolic process IEP Enrichment
MF GO:0030246 carbohydrate binding IEP Enrichment
BP GO:0044036 cell wall macromolecule metabolic process IEP Enrichment
BP GO:0044265 cellular macromolecule catabolic process IEP Enrichment
BP GO:0046348 amino sugar catabolic process IEP Enrichment
BP GO:1901071 glucosamine-containing compound metabolic process IEP Enrichment
BP GO:1901072 glucosamine-containing compound catabolic process IEP Enrichment
BP GO:1901575 organic substance catabolic process IEP Enrichment
InterPro domains Description Start Stop
IPR018076 T2SS_GspF_dom 74 196
IPR018076 T2SS_GspF_dom 277 399
No external refs found!