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Aliases : VCV51_033237, CspD
Description : cold shock domain-containing protein CspD [Ensembl]. 'Cold-shock' DNA-binding domain [Interproscan].
Gene families : OG_02_0000056 (OrthoFinder) Phylogenetic Tree(s): OG0000056_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: KNA53869 | |
| Cluster | HCCA: Cluster_13 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AAL19879 | STM0943, cspD | CspA-like protein but not cold shock induced [Ensembl].... | 0.06 | OrthoFinder | |
| AKP15786 | cspD, WX61_01751 | Cold shock-like protein CspD [Ensembl]. 'Cold-shock'... | 0.03 | OrthoFinder | |
| CCP46471 | cspA, Rv3648c | Probable cold shock protein A CspA [Ensembl].... | 0.03 | OrthoFinder | |
| CRP63148 | cspA_4 | Major cold shock protein CspA [Ensembl]. 'Cold-shock'... | 0.04 | OrthoFinder |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003676 | nucleic acid binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0006457 | protein folding | IEP | Enrichment |
| BP | GO:0009891 | positive regulation of biosynthetic process | IEP | Enrichment |
| BP | GO:0009893 | positive regulation of metabolic process | IEP | Enrichment |
| BP | GO:0010557 | positive regulation of macromolecule biosynthetic process | IEP | Enrichment |
| BP | GO:0010604 | positive regulation of macromolecule metabolic process | IEP | Enrichment |
| MF | GO:0016301 | kinase activity | IEP | Enrichment |
| MF | GO:0030234 | enzyme regulator activity | IEP | Enrichment |
| BP | GO:0031325 | positive regulation of cellular metabolic process | IEP | Enrichment |
| BP | GO:0031328 | positive regulation of cellular biosynthetic process | IEP | Enrichment |
| BP | GO:0032784 | regulation of DNA-templated transcription, elongation | IEP | Enrichment |
| BP | GO:0042618 | poly-hydroxybutyrate metabolic process | IEP | Enrichment |
| BP | GO:0042619 | poly-hydroxybutyrate biosynthetic process | IEP | Enrichment |
| BP | GO:0045893 | positive regulation of transcription, DNA-templated | IEP | Enrichment |
| BP | GO:0045935 | positive regulation of nucleobase-containing compound metabolic process | IEP | Enrichment |
| BP | GO:0048518 | positive regulation of biological process | IEP | Enrichment |
| BP | GO:0048522 | positive regulation of cellular process | IEP | Enrichment |
| BP | GO:0051173 | positive regulation of nitrogen compound metabolic process | IEP | Enrichment |
| BP | GO:0051254 | positive regulation of RNA metabolic process | IEP | Enrichment |
| MF | GO:0098772 | molecular function regulator | IEP | Enrichment |
| BP | GO:1901440 | poly(hydroxyalkanoate) metabolic process | IEP | Enrichment |
| BP | GO:1901441 | poly(hydroxyalkanoate) biosynthetic process | IEP | Enrichment |
| BP | GO:1902680 | positive regulation of RNA biosynthetic process | IEP | Enrichment |
| BP | GO:1903508 | positive regulation of nucleic acid-templated transcription | IEP | Enrichment |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR002059 | CSP_DNA-bd | 6 | 69 |
| No external refs found! |