KNA56243 (VCV51_032979)

Aliases : VCV51_032979

Description : endonuclease III [Ensembl]. Helix-hairpin-helix motif, Iron-sulfur binding domain of endonuclease III, HhH-GPD superfamily base excision DNA repair protein [Interproscan].

Gene families : OG_02_0000527 (OrthoFinder) Phylogenetic Tree(s): OG0000527_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: KNA56243
Cluster	HCCA: Cluster_11

Target	Alias	Description	ECC score	Gene Family Method
AAK99960	spr1157, nth	endonuclease III (DNA repair) [Ensembl]....	0.02	OrthoFinder
AKP15454	nth, WX61_01408	Endonuclease III [Ensembl]. Helix-hairpin-helix motif,...	0.05	OrthoFinder
CCG26728	No alias	Endonuclease III [Ensembl]. Helix-hairpin-helix motif,...	0.03	OrthoFinder
EDJ90330	modC, CGSHi22421_02341	molybdate transporter ATP-binding subunit [Ensembl]....	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006284	base-excision repair	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	cellular response to DNA damage stimulus	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	None	Extended
MF	GO:0051539	4 iron, 4 sulfur cluster binding	IEA	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	Enrichment
MF	GO:0003714	transcription corepressor activity	IEP	Enrichment
BP	GO:0006396	RNA processing	IEP	Enrichment
MF	GO:0009378	four-way junction helicase activity	IEP	Enrichment
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Enrichment
MF	GO:0016846	carbon-sulfur lyase activity	IEP	Enrichment
MF	GO:0016887	ATPase	IEP	Enrichment
MF	GO:0016989	sigma factor antagonist activity	IEP	Enrichment
CC	GO:0019867	outer membrane	IEP	Enrichment
BP	GO:0034470	ncRNA processing	IEP	Enrichment
MF	GO:0043768	S-ribosylhomocysteine lyase activity	IEP	Enrichment

InterPro domains	Description	Start	Stop
IPR003265	HhH-GPD_domain	34	168
IPR000445	HhH_motif	99	127
IPR003651	Endonuclease3_FeS-loop_motif	187	203

External Links

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KNA56243 (VCV51_032979)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation